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See other RAB40C CNV Assays ›
Gene Symbol
RAB40C
Assay Reference Genome
Location

Chr.16:601243 on build GRCh38
Cytoband
16p13.3
Assay ID Hs03934943_cn
Size
Availability Made To Order
Catalog # 4400291
Price 4,505.00
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4505.0
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Assay Details

Target Gene Details

Entrez Gene ID:

 57799

Gene Name:

 RAB40C, member RAS oncogene family

Gene Aliases:

 RARL, RASL8C

Location:

 Chr.16:589357-629273 on Build GRCh38

Assay Gene Location:

 Within Intron 4
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
RAB40C NM_001172663.1 NP_001166134.1
NM_001172664.1 NP_001166135.1
NM_001172665.1 NP_001166136.1
NM_001172666.1 NP_001166137.1
NM_021168.4 NP_066991.3
AY823398.1 AAV83924.1
BC028696.1 AAH28696.1
BG696681.1
BG715678.1
BM545442.1
BQ685517.1
BX442451.2
CX783728.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv833113 Chr.16:506513 - 628160 on Build GRCh38 Loss LOC101929280 MIR3176 LINC00235 RAB40C MIR5587 NHLRC4 PIGQ RAB11FIP3 LOC107987233 PRR35 CAPN15
nsv1040486 Chr.16:600788 - 627854 on Build GRCh38 Gain RAB40C
esv2422427 Chr.16:10001 - 2723164 on Build GRCh38 Duplication LOC105371046 LOC652276 AMDHD2 SLC9A3R2 MIR3178 LINC00235 ARHGDIG NTN3 MIR5587 SNORA78 LOC105371038 NOXO1 GNPTG ECI1 BAIAP3 SNORD60 WDR24 CACNA1H MIR6859-4 ABCA3 SOX8 NME3 MIR4717 RPL3L LUC7L MIR3177 RPS2 ERVK13-1 BRICD5 RHOT2 DECR2 LOC105371045 LMF1-AS1 GNG13 PRR35 FAHD1 TPSD1 PIGQ NARFL MSLN AXIN1 HAGH ABCA17P C16orf91 MCRIP2 METTL26 MLST8 LOC100134368 KCTD5 GFER FAM234A RAB11FIP3 MRPS34 NME4 LOC105371047 CEMP1 TPSAB1 LINC00254 SNHG9 RAB26 MIR662 RPUSD1 RNF151 MIR3176 TSC2 CLCN7 LOC729652 EME2 MAPK8IP3 TMEM8A MPG HAGHL MIR940 NUBP2 NDUFB10 HS3ST6 RAB40C SSTR5 TSR3 MSRB1 HBZ LOC100287175 RHBDF1 C16orf59 TBL3 ZNF598 LMF1 MIR6511B1 RHBDL1 CCNF MRPL28 MIR4516 LOC106660606 MIR6768 MIR3677 PKD1 NPRL3 PRR25 NPW METRN SNHG19 CAPN15 POLR3K UBE2I LOC105371184 TRAF7 NTHL1 PDIA2 MIR3180-5 PDPK1 HBQ1 RPL23AP5 SYNGR3 CCDC78 NHLRC4 TPSG1 LOC101929280 FBXL16 MEIOB PRSS27 SNRNP25 CASKIN1 RGS11 ATP6V0C MIR1225 CRAMP1 MIR6767 CCDC154 WFIKKN1 HN1L HBM LOC107984876 TMEM204 C1QTNF8 DDX11L10 SNORA10 DNASE1L2 FLJ42627 PRSS29P STUB1 SSTR5-AS1 SPSB3 IFT140 E4F1 JMJD8 RNPS1 IGFALS HBA2 PTX4 SNORA64 TPSB2 PGP UNKL LOC105371049 WDR90 CHTF18 TELO2 TBC1D24 FAM173A LOC107987233 WASIR2 HBA1
nsv471063 Chr.16:520623 - 852322 on Build GRCh38 Loss LOC101929280 FBXL16 LINC00235 RAB40C MIR5587 LOC105371038 PIGQ NARFL LOC100287175 MSLN WFIKKN1 MCRIP2 METTL26 WDR24 RAB11FIP3 STUB1 RHBDL1 JMJD8 PRR25 METRN CAPN15 MIR662 RPUSD1 LOC105371184 MIR3176 WDR90 CHTF18 CCDC78 RHOT2 NHLRC4 FAM173A GNG13 LOC107987233 PRR35 HAGHL
nsv526903 Chr.16:451362 - 810673 on Build GRCh38 Loss LOC101929280 FBXL16 LINC00235 RAB40C MIR5587 LOC105371038 PIGQ NARFL LOC100287175 MSLN WFIKKN1 MCRIP2 METTL26 WDR24 RAB11FIP3 STUB1 RHBDL1 JMJD8 PRR25 METRN CAPN15 MIR662 RPUSD1 LOC105371184 MIR3176 WDR90 CHTF18 CCDC78 RHOT2 NHLRC4 FAM173A GNG13 LOC107987233 PRR35 HAGHL
nsv952898 Chr.16:495001 - 1132900 on Build GRCh38 Deletion LOC101929280 FBXL16 LINC00235 RAB40C SSTR5 MIR5587 LOC105371038 PIGQ NARFL LOC100287175 MSLN WFIKKN1 MCRIP2 METTL26 LOC107984876 C1QTNF8 WDR24 RAB11FIP3 LMF1 STUB1 SSTR5-AS1 RHBDL1 SOX8 JMJD8 PRR25 METRN CAPN15 MIR662 RPUSD1 LOC105371184 MIR3176 WDR90 CHTF18 CCDC78 RHOT2 NHLRC4 LMF1-AS1 FAM173A GNG13 LOC107987233 PRR35 HAGHL
dgv4823n54 Chr.16:562698 - 662867 on Build GRCh38 Loss LOC101929280 WFIKKN1 MCRIP2 RAB40C WDR90 METTL26 NHLRC4 LOC105371038 PIGQ LOC100287175 LOC107987233 PRR35
nsv457304 Chr.16:554554 - 611142 on Build GRCh38 Gain LOC101929280 RAB40C NHLRC4 PIGQ LOC107987233 PRR35 CAPN15
nsv571012 Chr.16:583354 - 748489 on Build GRCh38 Loss LOC101929280 FBXL16 RHBDL1 RAB40C JMJD8 LOC105371038 PIGQ NARFL LOC100287175 METRN LOC105371184 WFIKKN1 MCRIP2 WDR90 METTL26 CCDC78 RHOT2 WDR24 FAM173A HAGHL STUB1
nsv1160326 Chr.16:580902 - 804689 on Build GRCh38 Duplication LOC101929280 FBXL16 RAB40C LOC105371038 PIGQ NARFL LOC100287175 MSLN WFIKKN1 MCRIP2 METTL26 WDR24 STUB1 RHBDL1 JMJD8 METRN MIR662 RPUSD1 LOC105371184 WDR90 CHTF18 CCDC78 RHOT2 FAM173A GNG13 HAGHL
nsv1160325 Chr.16:506925 - 836376 on Build GRCh38 Duplication LOC101929280 FBXL16 LINC00235 RAB40C MIR5587 LOC105371038 PIGQ NARFL LOC100287175 MSLN WFIKKN1 MCRIP2 METTL26 WDR24 RAB11FIP3 STUB1 RHBDL1 JMJD8 PRR25 METRN CAPN15 MIR662 RPUSD1 LOC105371184 MIR3176 WDR90 CHTF18 CCDC78 RHOT2 NHLRC4 FAM173A GNG13 LOC107987233 PRR35 HAGHL

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More Information


Set Membership:

 Intragenic Intronic Non-exonic DGV Variation

Gene Ontology Categories:

Function(s) Process(es)


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