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See other LOC105371419 CNV Assays ›
Gene Symbol
LOC105371419
Assay Reference Genome
Location

Chr.16:89851873 on build GRCh38
Cytoband
16q24.3
Assay ID Hs03934979_cn
Size
Availability Made To Order
Catalog # 4400291
Price
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Assay Details

Target Gene Details

Entrez Gene ID:

 105371419

Gene Name:

 uncharacterized LOC105371419

Gene Aliases:

 -

Location:

 Chr.16:89846857-89854277 on Build GRCh38

Assay Gene Location:

 Within Intron 1
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
LOC105371419 XM_011523522.2 XP_011521824.1

Target Gene Details

Entrez Gene ID:

 84501

Gene Name:

 spire type actin nucleation factor 2

Gene Aliases:

 Spir-2

Location:

 Chr.16:89817477-89871319 on Build GRCh38

Assay Gene Location:

 Within Intron 7
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
SPIRE2 NM_032451.1 NP_115827.1
XM_011523379.1 XP_011521681.1
XM_011523380.2 XP_011521682.1
XM_011523381.1 XP_011521683.1
XM_011523384.1 XP_011521686.1
XM_011523385.1 XP_011521687.1
XM_017023779.1 XP_016879268.1
XM_017023780.1 XP_016879269.1
XM_017023781.1 XP_016879270.1
AB058735.1 BAB47461.1
AJ422077.1 CAD19439.1
AL834408.1 CAD39070.1
BC111030.1 AAI11031.1
BC139732.1
BX439688.2

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv573744 Chr.16:89738447 - 89915950 on Build GRCh38 Loss SPIRE2 FANCA LOC107984817 LOC105371419 ZNF276 TCF25
esv3639601 Chr.16:89845985 - 89862110 on Build GRCh38 Loss SPIRE2 LOC105371419
esv2758671 Chr.16:89804324 - 89901541 on Build GRCh38 Loss SPIRE2 FANCA LOC107984817 LOC105371419 TCF25
nsv573743 Chr.16:89664419 - 89853617 on Build GRCh38 Gain SPIRE2 FANCA VPS9D1-AS1 SPATA2L LOC107984817 LOC105371419 SPATA33 ZNF276 CDK10 VPS9D1
esv2762221 Chr.16:89610380 - 90039318 on Build GRCh38 Gain+Loss CENPBD1 SPIRE2 FANCA VPS9D1-AS1 SPATA2L MC1R LOC105371419 AFG3L1P VPS9D1 TCF25 CHMP1A GAS8 DPEP1 LOC107984817 DBNDD1 GAS8-AS1 DEF8 SPATA33 ZNF276 TUBB3 CDK10
dgv1389n106 Chr.16:89851892 - 89852592 on Build GRCh38 Deletion SPIRE2 LOC105371419
nsv428331 Chr.16:89216635 - 90185980 on Build GRCh38 Gain+Loss ANKRD11 PRDM7 LOC105371419 TCF25 CHMP1A GAS8 DPEP1 LOC107984817 SNORD68 DBNDD1 GAS8-AS1 DEF8 SPATA33 TUBB3 LOC100287036 URAHP LOC105371414 CENPBD1 RPL13 FAM157C ZNF778 SPIRE2 FANCA VPS9D1-AS1 SPATA2L MC1R TUBB8P7 AFG3L1P CPNE7 VPS9D1 LOC101927817 SPG7 ZNF276 CDK10
dgv5330n54 Chr.16:89851129 - 89852857 on Build GRCh38 Loss SPIRE2 LOC105371419
nsv482951 Chr.16:88633593 - 90228345 on Build GRCh38 Loss MIR4722 ANKRD11 PRDM7 LINC00304 SNAI3-AS1 DPEP1 LOC107984817 SNORD68 DBNDD1 DEF8 SPATA33 TUBB3 LOC100287036 URAHP LOC105371414 ACSF3 SPIRE2 CBFA2T3 VPS9D1-AS1 SPATA2L MC1R LOC339059 AFG3L1P VPS9D1 LOC107987238 LOC101927817 MVD CDK10 LOC400558 LOC101927793 PABPN1L TRAPPC2L SNAI3 LOC105371419 LOC100289580 TCF25 CYBA CHMP1A GAS8 GAS8-AS1 IL17C RNF166 APRT GALNS CENPBD1 RPL13 FAM157C ZNF778 FANCA PIEZO1 CTU2 CDH15 CDT1 TUBB8P7 CPNE7 LOC100129697 SLC22A31 LOC105371409 SPG7 ZNF276

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More Information


Additional Information:

For this assay, SNP(s) [rs73270323] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

Set Membership:

 Intragenic Intronic Non-exonic DGV Variation

Panther Classification:

Gene Ontology Categories:

Function(s) Process(es)


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