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See other RAB40C CNV Assays ›
Gene Symbol
RAB40C
Assay Reference Genome
Location

Chr.16:600412 on build GRCh38
Cytoband
16p13.3
Assay ID Hs03935089_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 57799

Gene Name:

 RAB40C, member RAS oncogene family

Gene Aliases:

 RARL, RASL8C

Location:

 Chr.16:589357-629273 on Build GRCh38

Assay Gene Location:

 Within Intron 4
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
RAB40C NM_001172663.1 NP_001166134.1
NM_001172664.1 NP_001166135.1
NM_001172665.1 NP_001166136.1
NM_001172666.1 NP_001166137.1
NM_021168.4 NP_066991.3
AY823398.1 AAV83924.1
BC028696.1 AAH28696.1
BG696681.1
BG715678.1
BM545442.1
BQ685517.1
BX442451.2
CX783728.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv833113 Chr.16:506513 - 628160 on Build GRCh38 Loss NHLRC4 PIGQ LOC101929280 LINC00235 MIR5587 LOC107987233 RAB40C PRR35 RAB11FIP3 MIR3176 CAPN15
esv2422427 Chr.16:10001 - 2723164 on Build GRCh38 Duplication NTN3 HBM GNPTG METRN NUBP2 NOXO1 LOC729652 CCDC154 MRPL28 NPW SNORD60 TBL3 IGFALS MIR3177 WASIR2 MIR6859-4 SNORA64 DECR2 MEIOB RGS11 PRSS27 PRR25 HAGHL KCTD5 RPL23AP5 C1QTNF8 MSLN MIR3176 ECI1 LUC7L LINC00254 RPL3L LOC101929280 MIR1225 RHBDF1 SPSB3 LOC105371049 NARFL CLCN7 SNHG19 FAHD1 SSTR5-AS1 IFT140 PDPK1 RAB26 HBA2 HN1L METTL26 DNASE1L2 WFIKKN1 LMF1 SOX8 RNF151 FLJ42627 TMEM8A FBXL16 CRAMP1 BAIAP3 LOC652276 AMDHD2 MIR3180-5 TSC2 MIR4717 TRAF7 MIR6768 LOC105371038 MIR6511B1 LINC00235 JMJD8 TPSD1 DDX11L10 MPG PRR35 LOC106660606 SNORA78 HBQ1 HBZ SNORA10 HS3ST6 MIR3178 LOC107984876 SNHG9 SSTR5 LOC100134368 RPUSD1 WDR24 TPSAB1 PDIA2 CASKIN1 FAM173A NHLRC4 MSRB1 LOC105371047 LOC100287175 SNRNP25 MIR4516 RNPS1 AXIN1 LMF1-AS1 NPRL3 MIR6767 CAPN15 LOC105371184 RHOT2 MIR5587 NDUFB10 FAM234A CHTF18 SYNGR3 TMEM204 NME4 ZNF598 SLC9A3R2 TPSB2 ATP6V0C CEMP1 CACNA1H NME3 MLST8 RAB11FIP3 STUB1 EME2 LOC105371046 C16orf91 PIGQ PRSS29P ERVK13-1 HBA1 TSR3 HAGH TPSG1 MRPS34 TELO2 RPS2 WDR90 ABCA3 PTX4 GNG13 MAPK8IP3 ABCA17P POLR3K UBE2I BRICD5 CCNF NTHL1 MIR940 GFER PKD1 RHBDL1 PGP LOC107987233 UNKL E4F1 CCDC78 MCRIP2 TBC1D24 MIR3677 RAB40C ARHGDIG C16orf59 MIR662 LOC105371045
nsv471063 Chr.16:520623 - 852322 on Build GRCh38 Loss PIGQ METRN RPUSD1 WDR24 METTL26 FAM173A NHLRC4 WDR90 WFIKKN1 GNG13 LOC100287175 CAPN15 LOC105371184 RHOT2 FBXL16 RHBDL1 MIR5587 PRR25 HAGHL LOC107987233 MSLN MIR3176 CHTF18 CCDC78 LOC105371038 LOC101929280 MCRIP2 LINC00235 JMJD8 RAB40C MIR662 PRR35 NARFL RAB11FIP3 STUB1
nsv526903 Chr.16:451362 - 810673 on Build GRCh38 Loss PIGQ METRN RPUSD1 WDR24 METTL26 FAM173A NHLRC4 WDR90 WFIKKN1 GNG13 LOC100287175 CAPN15 LOC105371184 RHOT2 FBXL16 RHBDL1 MIR5587 PRR25 HAGHL LOC107987233 MSLN MIR3176 CHTF18 CCDC78 LOC105371038 LOC101929280 MCRIP2 LINC00235 JMJD8 RAB40C MIR662 PRR35 NARFL RAB11FIP3 STUB1
nsv952898 Chr.16:495001 - 1132900 on Build GRCh38 Deletion PIGQ METRN LOC107984876 SSTR5-AS1 SSTR5 RPUSD1 WDR24 METTL26 FAM173A NHLRC4 WDR90 WFIKKN1 LMF1 GNG13 LOC100287175 SOX8 LMF1-AS1 CAPN15 LOC105371184 RHOT2 FBXL16 RHBDL1 MIR5587 PRR25 HAGHL LOC107987233 C1QTNF8 MSLN MIR3176 CHTF18 CCDC78 LOC105371038 LOC101929280 MCRIP2 LINC00235 JMJD8 RAB40C MIR662 PRR35 NARFL RAB11FIP3 STUB1
dgv4823n54 Chr.16:562698 - 662867 on Build GRCh38 Loss NHLRC4 PIGQ LOC105371038 WDR90 WFIKKN1 LOC101929280 MCRIP2 LOC100287175 LOC107987233 RAB40C PRR35 METTL26
nsv457304 Chr.16:554554 - 611142 on Build GRCh38 Gain NHLRC4 PIGQ LOC101929280 LOC107987233 RAB40C PRR35 CAPN15
nsv571012 Chr.16:583354 - 748489 on Build GRCh38 Loss PIGQ FBXL16 METRN RHBDL1 HAGHL WDR24 METTL26 FAM173A CCDC78 LOC105371038 WDR90 WFIKKN1 LOC101929280 MCRIP2 JMJD8 LOC100287175 RAB40C NARFL STUB1 LOC105371184 RHOT2
nsv1160326 Chr.16:580902 - 804689 on Build GRCh38 Duplication PIGQ METRN RPUSD1 WDR24 METTL26 FAM173A WDR90 WFIKKN1 GNG13 LOC100287175 LOC105371184 RHOT2 FBXL16 RHBDL1 HAGHL MSLN CHTF18 CCDC78 LOC105371038 LOC101929280 MCRIP2 JMJD8 RAB40C MIR662 NARFL STUB1
nsv1160325 Chr.16:506925 - 836376 on Build GRCh38 Duplication PIGQ METRN RPUSD1 WDR24 METTL26 FAM173A NHLRC4 WDR90 WFIKKN1 GNG13 LOC100287175 CAPN15 LOC105371184 RHOT2 FBXL16 RHBDL1 MIR5587 PRR25 HAGHL LOC107987233 MSLN MIR3176 CHTF18 CCDC78 LOC105371038 LOC101929280 MCRIP2 LINC00235 JMJD8 RAB40C MIR662 PRR35 NARFL RAB11FIP3 STUB1

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More Information


Set Membership:

 Intragenic Intronic Non-exonic DGV Variation

Gene Ontology Categories:

Function(s) Process(es)


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