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See other RAB40C CNV Assays ›
Gene Symbol
RAB40C
Assay Reference Genome
Location

Chr.16:591499 on build GRCh38
Cytoband
16p13.3
Assay ID Hs03935351_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 57799

Gene Name:

 RAB40C, member RAS oncogene family

Gene Aliases:

 RARL, RASL8C

Location:

 Chr.16:589357-629273 on Build GRCh38

Assay Gene Location:

 Within Intron 4
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
RAB40C NM_001172663.1 NP_001166134.1
NM_001172664.1 NP_001166135.1
NM_001172665.1 NP_001166136.1
NM_001172666.1 NP_001166137.1
NM_021168.4 NP_066991.3
AY823398.1 AAV83924.1
BC028696.1 AAH28696.1
BG696681.1
BG715678.1
BM545442.1
BQ685517.1
BX442451.2
CX783728.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv833113 Chr.16:506513 - 628160 on Build GRCh38 Loss PRR35 NHLRC4 MIR5587 CAPN15 RAB40C LINC00235 RAB11FIP3 LOC101929280 LOC107987233 MIR3176 PIGQ
esv2422427 Chr.16:10001 - 2723164 on Build GRCh38 Duplication HBA2 CCDC78 TPSG1 AXIN1 AMDHD2 CCNF C1QTNF8 ZNF598 DNASE1L2 MIR6767 SNORA10 MRPL28 RGS11 PDPK1 SYNGR3 BAIAP3 CASKIN1 MIR3178 NARFL JMJD8 GNG13 SSTR5-AS1 SPSB3 FBXL16 RAB26 LOC100134368 PKD1 MIR940 HAGH LOC107984876 TSC2 CLCN7 TMEM204 HBA1 MIR3677 LOC105371038 SOX8 MIR3180-5 LINC00254 CAPN15 ATP6V0C RPUSD1 LOC105371049 GFER CEMP1 RNF151 TSR3 METTL26 HBQ1 WDR24 HN1L E4F1 SNORD60 LOC729652 HS3ST6 MLST8 METRN MRPS34 TBC1D24 TRAF7 HAGHL DECR2 MIR1225 IGFALS IFT140 SLC9A3R2 SNHG19 ABCA17P RNPS1 ECI1 CHTF18 WDR90 ABCA3 NOXO1 MIR4717 MCRIP2 TPSD1 NDUFB10 TPSAB1 TMEM8A MPG MAPK8IP3 LOC105371045 FAM173A FAHD1 MIR3177 CCDC154 STUB1 LMF1 TPSB2 LUC7L LINC00235 CRAMP1 MSLN RPL3L NPW LOC106660606 ERVK13-1 RPL23AP5 SNRNP25 WFIKKN1 HBM GNPTG NME3 NTHL1 SNHG9 LOC652276 FLJ42627 RHBDL1 POLR3K PTX4 RAB11FIP3 PDIA2 LOC107987233 MIR4516 HBZ PRR35 SSTR5 RAB40C PRSS27 MSRB1 PRR25 TBL3 RHOT2 NHLRC4 NPRL3 SNORA64 ARHGDIG MIR3176 MIR662 MEIOB KCTD5 DDX11L10 MIR6511B1 RHBDF1 CACNA1H BRICD5 LMF1-AS1 PIGQ SNORA78 MIR6768 TELO2 MIR5587 WASIR2 RPS2 LOC100287175 UBE2I LOC105371046 C16orf59 LOC101929280 PGP LOC105371047 EME2 PRSS29P FAM234A UNKL LOC105371184 MIR6859-4 C16orf91 NME4 NUBP2 NTN3
nsv471063 Chr.16:520623 - 852322 on Build GRCh38 Loss RHOT2 LOC105371038 FAM173A NHLRC4 CAPN15 RPUSD1 STUB1 CCDC78 LINC00235 MSLN MIR3176 MIR662 METTL26 WDR24 WFIKKN1 NARFL JMJD8 GNG13 PIGQ METRN HAGHL MIR5587 LOC100287175 FBXL16 RHBDL1 RAB11FIP3 LOC101929280 CHTF18 LOC107987233 WDR90 PRR35 MCRIP2 RAB40C LOC105371184 PRR25
nsv526903 Chr.16:451362 - 810673 on Build GRCh38 Loss RHOT2 LOC105371038 FAM173A NHLRC4 CAPN15 RPUSD1 STUB1 CCDC78 LINC00235 MSLN MIR3176 MIR662 METTL26 WDR24 WFIKKN1 NARFL JMJD8 GNG13 PIGQ METRN HAGHL MIR5587 LOC100287175 FBXL16 RHBDL1 RAB11FIP3 LOC101929280 CHTF18 LOC107987233 WDR90 PRR35 MCRIP2 RAB40C LOC105371184 PRR25
nsv952898 Chr.16:495001 - 1132900 on Build GRCh38 Deletion RHOT2 LOC105371038 FAM173A NHLRC4 SOX8 CAPN15 RPUSD1 STUB1 CCDC78 LMF1 LINC00235 MSLN MIR3176 MIR662 C1QTNF8 METTL26 WDR24 WFIKKN1 LMF1-AS1 NARFL JMJD8 GNG13 PIGQ METRN SSTR5-AS1 HAGHL MIR5587 LOC100287175 FBXL16 RHBDL1 RAB11FIP3 LOC101929280 CHTF18 LOC107987233 WDR90 PRR35 LOC107984876 SSTR5 MCRIP2 RAB40C LOC105371184 PRR25
dgv4823n54 Chr.16:562698 - 662867 on Build GRCh38 Loss WDR90 PRR35 METTL26 LOC105371038 NHLRC4 LOC100287175 WFIKKN1 MCRIP2 RAB40C LOC101929280 LOC107987233 PIGQ
nsv457304 Chr.16:554554 - 611142 on Build GRCh38 Gain PRR35 NHLRC4 CAPN15 RAB40C LOC101929280 LOC107987233 PIGQ
nsv571012 Chr.16:583354 - 748489 on Build GRCh38 Loss RHOT2 METRN LOC105371038 HAGHL FAM173A LOC100287175 FBXL16 STUB1 RHBDL1 CCDC78 LOC101929280 WDR90 METTL26 WDR24 WFIKKN1 MCRIP2 RAB40C LOC105371184 NARFL JMJD8 PIGQ
nsv1160326 Chr.16:580902 - 804689 on Build GRCh38 Duplication RHOT2 LOC105371038 FAM173A RPUSD1 STUB1 CCDC78 MSLN MIR662 METTL26 WDR24 WFIKKN1 NARFL JMJD8 GNG13 PIGQ METRN HAGHL LOC100287175 FBXL16 RHBDL1 LOC101929280 CHTF18 WDR90 MCRIP2 RAB40C LOC105371184
nsv1160325 Chr.16:506925 - 836376 on Build GRCh38 Duplication RHOT2 LOC105371038 FAM173A NHLRC4 CAPN15 RPUSD1 STUB1 CCDC78 LINC00235 MSLN MIR3176 MIR662 METTL26 WDR24 WFIKKN1 NARFL JMJD8 GNG13 PIGQ METRN HAGHL MIR5587 LOC100287175 FBXL16 RHBDL1 RAB11FIP3 LOC101929280 CHTF18 LOC107987233 WDR90 PRR35 MCRIP2 RAB40C LOC105371184 PRR25

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More Information


Set Membership:

 Intragenic Intronic Non-exonic DGV Variation

Gene Ontology Categories:

Function(s) Process(es)


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