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See other RAB40C CNV Assays ›
Gene Symbol
RAB40C
Assay Reference Genome
Location

Chr.16:597218 on build GRCh38
Cytoband
16p13.3
Assay ID Hs03935496_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 57799

Gene Name:

 RAB40C, member RAS oncogene family

Gene Aliases:

 RARL, RASL8C

Location:

 Chr.16:589357-629273 on Build GRCh38

Assay Gene Location:

 Within Intron 4
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
RAB40C NM_001172663.1 NP_001166134.1
NM_001172664.1 NP_001166135.1
NM_001172665.1 NP_001166136.1
NM_001172666.1 NP_001166137.1
NM_021168.4 NP_066991.3
AY823398.1 AAV83924.1
BC028696.1 AAH28696.1
BG696681.1
BG715678.1
BM545442.1
BQ685517.1
BX442451.2
CX783728.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv833113 Chr.16:506513 - 628160 on Build GRCh38 Loss PIGQ RAB40C LOC107987233 PRR35 LINC00235 MIR3176 NHLRC4 LOC101929280 CAPN15 RAB11FIP3 MIR5587
esv2422427 Chr.16:10001 - 2723164 on Build GRCh38 Duplication MAPK8IP3 STUB1 GNG13 ARHGDIG LMF1-AS1 MLST8 LOC105371047 C16orf91 CRAMP1 UNKL LOC106660606 HAGHL POLR3K IFT140 RPS2 MIR6511B1 WASIR2 SNORA78 TSR3 MPG SNRNP25 TPSD1 C1QTNF8 CACNA1H MRPL28 DDX11L10 TPSB2 PIGQ NTHL1 LINC00235 MSRB1 LOC101929280 HBA1 HBM MIR3180-5 MIR6768 KCTD5 MSLN FAM173A SOX8 TPSAB1 MIR6767 ABCA3 BRICD5 PDPK1 PRSS27 PKD1 SPSB3 C16orf59 PRR35 LUC7L FAM234A NHLRC4 NPRL3 SNHG19 PDIA2 HBQ1 LOC105371046 PGP SNORD60 MIR940 MIR3178 RHBDF1 SLC9A3R2 ATP6V0C AMDHD2 AXIN1 DNASE1L2 TELO2 RNPS1 NOXO1 ECI1 CEMP1 METRN MIR3176 MCRIP2 CCDC78 ERVK13-1 WDR24 HAGH SNHG9 PRR25 GNPTG TPSG1 CHTF18 NUBP2 TMEM204 RHBDL1 E4F1 FAHD1 CASKIN1 NPW UBE2I HBZ MIR662 WDR90 LOC107987233 FLJ42627 SNORA10 MEIOB PRSS29P MIR4717 TBL3 ABCA17P IGFALS RNF151 NARFL ZNF598 LMF1 CLCN7 TRAF7 MIR6859-4 LOC100287175 METTL26 LOC107984876 LOC100134368 PTX4 RPL23AP5 LOC652276 MIR5587 GFER SNORA64 LOC105371184 NTN3 HN1L NDUFB10 CCNF LOC729652 MIR4516 RPUSD1 SSTR5-AS1 SSTR5 NME4 EME2 LINC00254 MRPS34 NME3 MIR3177 RGS11 MIR1225 HS3ST6 RAB40C RAB26 LOC105371049 CCDC154 RPL3L LOC105371038 DECR2 HBA2 TBC1D24 JMJD8 MIR3677 WFIKKN1 FBXL16 RHOT2 LOC105371045 CAPN15 TMEM8A SYNGR3 RAB11FIP3 BAIAP3 TSC2
nsv471063 Chr.16:520623 - 852322 on Build GRCh38 Loss STUB1 GNG13 RHBDL1 LOC105371184 PRR35 NHLRC4 MIR662 RPUSD1 HAGHL WDR90 LOC107987233 NARFL PIGQ RAB40C METRN LOC100287175 LINC00235 MIR3176 MCRIP2 LOC101929280 METTL26 CCDC78 LOC105371038 WDR24 MSLN FAM173A JMJD8 PRR25 WFIKKN1 FBXL16 RHOT2 CHTF18 CAPN15 RAB11FIP3 MIR5587
nsv526903 Chr.16:451362 - 810673 on Build GRCh38 Loss STUB1 GNG13 RHBDL1 LOC105371184 PRR35 NHLRC4 MIR662 RPUSD1 HAGHL WDR90 LOC107987233 NARFL PIGQ RAB40C METRN LOC100287175 LINC00235 MIR3176 MCRIP2 LOC101929280 METTL26 CCDC78 LOC105371038 WDR24 MSLN FAM173A JMJD8 PRR25 WFIKKN1 FBXL16 RHOT2 CHTF18 CAPN15 RAB11FIP3 MIR5587
nsv952898 Chr.16:495001 - 1132900 on Build GRCh38 Deletion STUB1 GNG13 RHBDL1 LOC105371184 LMF1-AS1 PRR35 NHLRC4 MIR662 RPUSD1 SSTR5-AS1 HAGHL SSTR5 WDR90 LOC107987233 C1QTNF8 NARFL LMF1 PIGQ RAB40C METRN LOC100287175 LINC00235 MIR3176 MCRIP2 LOC101929280 METTL26 LOC107984876 CCDC78 LOC105371038 WDR24 MSLN FAM173A SOX8 JMJD8 PRR25 WFIKKN1 FBXL16 RHOT2 CHTF18 CAPN15 RAB11FIP3 MIR5587
dgv4823n54 Chr.16:562698 - 662867 on Build GRCh38 Loss LOC105371038 PIGQ WDR90 WFIKKN1 RAB40C LOC107987233 LOC100287175 PRR35 MCRIP2 NHLRC4 LOC101929280 METTL26
nsv457304 Chr.16:554554 - 611142 on Build GRCh38 Gain PIGQ RAB40C LOC107987233 PRR35 NHLRC4 LOC101929280 CAPN15
nsv571012 Chr.16:583354 - 748489 on Build GRCh38 Loss NARFL STUB1 PIGQ RHBDL1 LOC105371184 RAB40C METRN LOC100287175 MCRIP2 LOC101929280 METTL26 CCDC78 LOC105371038 WDR24 HAGHL FAM173A JMJD8 WDR90 WFIKKN1 FBXL16 RHOT2
nsv1160326 Chr.16:580902 - 804689 on Build GRCh38 Duplication STUB1 GNG13 RHBDL1 LOC105371184 MIR662 RPUSD1 HAGHL WDR90 NARFL PIGQ RAB40C METRN LOC100287175 MCRIP2 LOC101929280 METTL26 CCDC78 LOC105371038 WDR24 MSLN FAM173A JMJD8 WFIKKN1 FBXL16 RHOT2 CHTF18
nsv1160325 Chr.16:506925 - 836376 on Build GRCh38 Duplication STUB1 GNG13 RHBDL1 LOC105371184 PRR35 NHLRC4 MIR662 RPUSD1 HAGHL WDR90 LOC107987233 NARFL PIGQ RAB40C METRN LOC100287175 LINC00235 MIR3176 MCRIP2 LOC101929280 METTL26 CCDC78 LOC105371038 WDR24 MSLN FAM173A JMJD8 PRR25 WFIKKN1 FBXL16 RHOT2 CHTF18 CAPN15 RAB11FIP3 MIR5587

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More Information


Set Membership:

 Intragenic Intronic Non-exonic DGV Variation

Gene Ontology Categories:

Function(s) Process(es)


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