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Gene Symbol
CLN3
Assay Reference Genome
Location

Chr.16:28484723 on build GRCh38
Cytoband
16p12.1
Assay ID Hs03939047_cn
Size
Availability Made To Order
Catalog # 4400291
Price
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Assay Details

Target Gene Details

Entrez Gene ID:

 1201

Gene Name:

 CLN3, battenin

Gene Aliases:

 BTS, JNCL

Location:

 Chr.16:28466653-28492302 on Build GRCh38

Assay Gene Location:

 Within Intron 8
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
CLN3 NM_000086.2 NP_000077.1
NM_001042432.1 NP_001035897.1
NM_001286104.1 NP_001273033.1
NM_001286105.1 NP_001273034.1
NM_001286109.1 NP_001273038.1
NM_001286110.1 NP_001273039.1
AF015593.1 AAD01555.1
AF015594.1 AAD01556.1
AF015595.1 AAD01557.1
AF015597.1 AAD01559.1
AF015598.1 AAD01560.1
AF015599.1 AAD01561.1
AF015600.1 AAD01562.1
AF015601.1 AAD01563.1
AF015602.1 AAD01564.1
AF077956.1 AAD51478.1
AF077957.1 AAD51479.1
AF077958.1 AAD51480.1
AF077959.1 AAD51481.1
AF077960.1 AAD51482.1
AF077961.1 AAD51483.1
AF077962.1 AAD51484.1
AF077963.1 AAD51485.1
AF077964.1 AAD51486.1
AF077965.1 AAD51487.1
AF077966.1 AAD51488.1
AF077967.1 AAD51489.1
AF077968.1 AAD51490.1
AF077969.1 AAD51491.1
AF077970.1 AAD51492.1
AF077971.1 AAD51493.1
AF077972.1 AAD51494.1
AF077973.1 AAD51495.1
AF078169.1 AAD48543.1
AK090709.1
AK294070.1
AK294250.1
AK295500.1
AK297690.1
AK302027.1
AK302138.1
AK313002.1
BC002394.2 AAH02394.1
BC004433.1 AAH04433.1
BC111068.1 AAI11069.1
EF587244.1
EF587245.1
U32680.1 AAB51075.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv509608 Chr.16:28449797 - 28632895 on Build GRCh38 Insertion CLN3 SULT1A1 IL27 SGF29 APOBR SULT1A2 NUPR1
esv2758640 Chr.16:28163817 - 29139232 on Build GRCh38 Gain+Loss CLN3 LAT MIR4721 NPIPB8 LOC101928215 RRN3P2 SULT1A1 SPNS1 RABEP2 IL27 EIF3C TUFM NPIPB6 SGF29 NFATC2IP ATXN2L SBK1 ATP2A1-AS1 NPIPB9 XPO6 MIR4517 NPIP SULT1A2 NUPR1 CD19 MIR6862-2 MIR6862-1 ATP2A1 SH2B1 APOBR EIF3CL
nsv1059555 Chr.16:28373144 - 29195838 on Build GRCh38 Gain CLN3 LAT MIR4721 NPIPB8 LOC107984832 LOC101928215 RRN3P2 SULT1A1 SPNS1 RABEP2 IL27 EIF3C TUFM SGF29 NFATC2IP ATXN2L ATP2A1-AS1 NPIPB9 MIR4517 NPIP SULT1A2 NUPR1 CD19 MIR6862-2 MIR6862-1 ATP2A1 SH2B1 APOBR EIF3CL
nsv833180 Chr.16:28346157 - 28574165 on Build GRCh38 Loss MIR6862-1 CLN3 IL27 NPIPB6 SGF29 APOBR EIF3CL NUPR1
nsv9415 Chr.16:28468881 - 28498959 on Build GRCh38 Gain CLN3 APOBR

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More Information


Additional Information:

For this assay, SNP(s) [rs76662516] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

Set Membership:

 Intragenic Intronic Non-exonic DGV Variation

Panther Classification:

Gene Ontology Categories:

Function(s) Process(es)


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