Hs03942721_cn

• Gene Symbol: CHST6
• Assay Reference Genome Location: Chr.16:75489518 on build GRCh38
• Cytoband: 16q23.1

Target Gene Details

• Entrez Gene ID: 4166
• Gene Name: carbohydrate sulfotransferase 6
• Gene Aliases: MCDC1
• Location: Chr.16:75473124-75495419 on Build GRCh38
• Assay Gene Location: Within Intron 2

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
CHST6	NM_021615.4			NP_067628.1
	XM_005255955.4			XP_005256012.1
	AF280086.1			AAG48244.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv572981	Chr.16:75487132 - 75547262 on Build GRCh38	Gain	CHST6 CHST5 TMEM231
nsv1063718	Chr.16:75362071 - 75574173 on Build GRCh38	Gain	CFDP1 GABARAPL2 CHST6 CHST5 TMEM231 TMEM170A
nsv1059777	Chr.16:75489056 - 75538815 on Build GRCh38	Loss	CHST6 CHST5 TMEM231
esv3639093	Chr.16:75476237 - 75490082 on Build GRCh38	Loss	CHST6
esv3571642	Chr.16:75471148 - 75515756 on Build GRCh38	Gain	CHST6
esv2758657	Chr.16:75385716 - 75543073 on Build GRCh38	Gain	CFDP1 CHST6 CHST5 TMEM231 TMEM170A
nsv525955	Chr.16:75439434 - 75594447 on Build GRCh38	Loss	GABARAPL2 CHST6 CHST5 TMEM231 TMEM170A
esv2672875	Chr.16:75488740 - 75490287 on Build GRCh38	Deletion	CHST6
nsv1065995	Chr.16:75339858 - 75592129 on Build GRCh38	Loss	CFDP1 GABARAPL2 CHST6 CHST5 TMEM231 TMEM170A
nsv457521	Chr.16:75453860 - 75570027 on Build GRCh38	Gain	GABARAPL2 CHST6 CHST5 TMEM231 TMEM170A
esv2714710	Chr.16:75482503 - 75532390 on Build GRCh38	Deletion	CHST6 CHST5
esv3639094	Chr.16:75488863 - 75490396 on Build GRCh38	Loss	CHST6

More Information

Additional Information:

For this assay, SNP(s) [rs79558487] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

• Set Membership: Intragenic, Intronic, Non-exonic, DGV Variation

Panther Classification:

Molecular Function -

transferase

Gene Ontology Categories:

Process(es)

carbohydrate metabolic process
N-acetylglucosamine metabolic process
sulfur compound metabolic process
keratan sulfate biosynthetic process

Function(s)

N-acetylglucosamine 6-O-sulfotransferase activity