Hs03942895_cn

• Gene Symbol: PIGQ
• Assay Reference Genome Location: Chr.16:572153 on build GRCh38
• Cytoband: 16p13.3

Target Gene Details

• Entrez Gene ID: 9091
• Gene Name: phosphatidylinositol glycan anchor biosynthesis class Q
• Gene Aliases: GPI1, c407A10.1
• Location: Chr.16:569968-584136 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PIGQ	NM_004204.3			NP_004195.2
	NM_148920.2			NP_683721.1
	AB003723.1			BAA24948.1
	AF030177.1			AAC32661.1
	AK314361.1
	BC006377.2			AAH06377.1
	DA206420.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv833113	Chr.16:506513 - 628160 on Build GRCh38	Loss	MIR5587 RAB11FIP3 LOC107987233 LOC101929280 LINC00235 NHLRC4 PIGQ RAB40C PRR35 CAPN15 MIR3176
esv2422427	Chr.16:10001 - 2723164 on Build GRCh38	Duplication	RAB40C POLR3K SNHG9 PDPK1 NTHL1 SNHG19 TPSG1 LOC652276 MRPS34 SOX8 PIGQ RHBDL1 CRAMP1 CEMP1 NUBP2 C16orf59 JMJD8 CACNA1H NOXO1 SSTR5 MRPL28 HBZ LMF1-AS1 CCDC78 CCNF RHOT2 METTL26 NHLRC4 FAM173A MIR3677 BAIAP3 FAM234A PKD1 MIR5587 IGFALS LOC107987233 STUB1 IFT140 ABCA17P RNPS1 MIR4516 DDX11L10 SSTR5-AS1 LOC100134368 RPL3L WASIR2 MCRIP2 KCTD5 LOC100287175 LOC105371049 LMF1 HS3ST6 LOC105371038 RPUSD1 CHTF18 HBA1 MIR3180-5 RNF151 TMEM204 ARHGDIG NARFL METRN LOC729652 RHBDF1 LOC106660606 MIR940 MPG LOC105371047 SNORD60 BRICD5 LINC00254 WDR24 PRSS27 C16orf91 DECR2 TPSD1 AMDHD2 PRR25 MSLN WDR90 RAB26 ZNF598 HAGHL NPRL3 E4F1 SLC9A3R2 FLJ42627 MIR3177 ATP6V0C TPSB2 HN1L UNKL LOC105371045 MLST8 LOC107984876 PDIA2 ABCA3 NTN3 FBXL16 PGP TSR3 HBQ1 MIR1225 SNORA64 LOC101929280 SPSB3 MIR662 RGS11 NME3 RPL23AP5 TBL3 HBA2 CLCN7 C1QTNF8 SNORA10 LOC105371046 MIR3178 TSC2 NME4 HBM MAPK8IP3 MEIOB DNASE1L2 RPS2 GFER ECI1 NPW PRR35 CAPN15 SNORA78 GNG13 MIR6511B1 LOC105371184 EME2 WFIKKN1 GNPTG MIR4717 CCDC154 TBC1D24 MIR6768 TMEM8A PTX4 HAGH MIR6767 TPSAB1 PRSS29P TRAF7 MSRB1 RAB11FIP3 SYNGR3 AXIN1 MIR3176 MIR6859-4 SNRNP25 ERVK13-1 LINC00235 UBE2I NDUFB10 FAHD1 CASKIN1 TELO2 LUC7L
nsv471063	Chr.16:520623 - 852322 on Build GRCh38	Loss	MIR5587 PRR25 MSLN LOC107987233 STUB1 LOC105371184 WDR90 RAB40C HAGHL WFIKKN1 FBXL16 MCRIP2 PIGQ LOC100287175 RHBDL1 JMJD8 LOC105371038 RAB11FIP3 LOC101929280 RPUSD1 CHTF18 MIR662 NARFL METRN MIR3176 CCDC78 LINC00235 RHOT2 METTL26 NHLRC4 FAM173A WDR24 PRR35 CAPN15 GNG13
nsv526903	Chr.16:451362 - 810673 on Build GRCh38	Loss	MIR5587 PRR25 MSLN LOC107987233 STUB1 LOC105371184 WDR90 RAB40C HAGHL WFIKKN1 FBXL16 MCRIP2 PIGQ LOC100287175 RHBDL1 JMJD8 LOC105371038 RAB11FIP3 LOC101929280 RPUSD1 CHTF18 MIR662 NARFL METRN MIR3176 CCDC78 LINC00235 RHOT2 METTL26 NHLRC4 FAM173A WDR24 PRR35 CAPN15 GNG13
nsv952898	Chr.16:495001 - 1132900 on Build GRCh38	Deletion	MIR5587 PRR25 MSLN LOC107987233 STUB1 LOC105371184 WDR90 RAB40C HAGHL WFIKKN1 SSTR5-AS1 LOC107984876 FBXL16 SOX8 MCRIP2 PIGQ LOC100287175 RHBDL1 LMF1 JMJD8 LOC105371038 RAB11FIP3 LOC101929280 RPUSD1 CHTF18 SSTR5 MIR662 NARFL C1QTNF8 METRN LMF1-AS1 MIR3176 CCDC78 LINC00235 RHOT2 METTL26 NHLRC4 FAM173A WDR24 PRR35 CAPN15 GNG13
dgv4823n54	Chr.16:562698 - 662867 on Build GRCh38	Loss	LOC105371038 LOC107987233 LOC101929280 MCRIP2 METTL26 WDR90 NHLRC4 PIGQ LOC100287175 RAB40C WFIKKN1 PRR35
nsv457304	Chr.16:554554 - 611142 on Build GRCh38	Gain	LOC107987233 LOC101929280 NHLRC4 PIGQ RAB40C PRR35 CAPN15
nsv1160325	Chr.16:506925 - 836376 on Build GRCh38	Duplication	MIR5587 PRR25 MSLN LOC107987233 STUB1 LOC105371184 WDR90 RAB40C HAGHL WFIKKN1 FBXL16 MCRIP2 PIGQ LOC100287175 RHBDL1 JMJD8 LOC105371038 RAB11FIP3 LOC101929280 RPUSD1 CHTF18 MIR662 NARFL METRN MIR3176 CCDC78 LINC00235 RHOT2 METTL26 NHLRC4 FAM173A WDR24 PRR35 CAPN15 GNG13

More Information

• Set Membership: Intragenic, Intronic, Non-exonic, DGV Variation

Panther Classification:

Molecular Function -

glycosyltransferase

Gene Ontology Categories:

Process(es)

carbohydrate metabolic process
preassembly of GPI anchor in ER membrane

Function(s)

phosphatidylinositol N-acetylglucosaminyltransferase activity