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See other GNPTG CNV Assays ›
Gene Symbol
GNPTG
Assay Reference Genome
Location

Chr.16:1356862 on build GRCh38
Cytoband
16p13.3
Assay ID Hs03942896_cn
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Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 84572

Gene Name:

 N-acetylglucosamine-1-phosphate transferase gamma subunit

Gene Aliases:

 C16orf27, GNPTAG, LP2537, RJD9

Location:

 Chr.16:1351899-1363351 on Build GRCh38

Assay Gene Location:

 Within Intron 3
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
GNPTG NM_032520.4 NP_115909.1
XM_017023782.1 XP_016879271.1
AF302786.1 AAG27706.1
AK312067.1
AY203933.1 AAP34456.1
BC014592.1 AAH14592.1
BC131525.1
BU145878.1
DT219524.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
esv2762143 Chr.16:1270592 - 1519404 on Build GRCh38 Gain C16orf91 LOC105371045 GNPTG IFT140 TSR3 UNKL BAIAP3 CCDC154 CLCN7 PTX4 TELO2 UBE2I
dgv473e214 Chr.16:1356674 - 1364974 on Build GRCh38 Loss GNPTG UNKL
esv2422427 Chr.16:10001 - 2723164 on Build GRCh38 Duplication TPSD1 LOC105371046 BRICD5 POLR3K MIR4516 LOC105371049 LOC105371047 LOC100287175 LINC00254 NOXO1 MIR6859-4 SYNGR3 RNPS1 MIR4717 LOC107984876 RAB26 PKD1 HAGH TPSB2 MIR6768 CCDC78 C16orf91 MPG MIR3178 NTN3 RAB11FIP3 MAPK8IP3 WFIKKN1 CACNA1H SNHG19 MIR6767 SNORD60 ERVK13-1 MSRB1 SSTR5-AS1 MCRIP2 TMEM204 LMF1-AS1 RPL3L RAB40C RNF151 RPUSD1 CHTF18 ARHGDIG NUBP2 MIR1225 MIR3677 ABCA3 FLJ42627 BAIAP3 LOC107987233 PTX4 PRR25 HS3ST6 NTHL1 WDR24 CASKIN1 TSC2 MIR3177 GNG13 LOC105371184 MRPS34 LOC106660606 C1QTNF8 RPS2 NME4 DNASE1L2 ABCA17P MIR3180-5 SNORA64 HBA1 ZNF598 TPSG1 SNHG9 LOC652276 PDIA2 CRAMP1 SNORA10 FAM234A HBA2 AXIN1 NPRL3 SNORA78 AMDHD2 WDR90 PRR35 PGP SOX8 RPL23AP5 LMF1 TBC1D24 STUB1 DECR2 TPSAB1 RHBDL1 KCTD5 HBQ1 PRSS29P LOC101929280 METTL26 FAM173A MIR3176 EME2 NDUFB10 TBL3 CCNF MIR940 FBXL16 HBM UNKL HAGHL TRAF7 SSTR5 TELO2 UBE2I MLST8 LOC105371045 ATP6V0C MIR5587 RHBDF1 GFER CLCN7 SLC9A3R2 E4F1 IGFALS RGS11 LUC7L RHOT2 SNRNP25 CAPN15 HBZ LINC00235 PIGQ PDPK1 NPW MIR662 METRN FAHD1 GNPTG NHLRC4 NME3 MIR6511B1 TSR3 HN1L ECI1 MEIOB CCDC154 DDX11L10 NARFL SPSB3 IFT140 WASIR2 LOC105371038 JMJD8 MSLN LOC100134368 LOC729652 C16orf59 TMEM8A CEMP1 PRSS27 MRPL28
esv2750330 Chr.16:1356840 - 1357024 on Build GRCh38 Deletion GNPTG
nsv471066 Chr.16:893361 - 1482836 on Build GRCh38 Loss TPSD1 C16orf91 GNPTG C1QTNF8 TSR3 UNKL BAIAP3 CCDC154 CACNA1H SOX8 SSTR5 UBE2I LMF1 LOC105371045 LOC107984876 SSTR5-AS1 TPSG1 TPSAB1 LMF1-AS1 TPSB2 PRSS29P CLCN7
dgv2692n100 Chr.16:1002943 - 1394728 on Build GRCh38 Gain TPSD1 GNPTG C1QTNF8 TSR3 UNKL BAIAP3 CACNA1H SSTR5 UBE2I SSTR5-AS1 TPSG1 TPSAB1 TPSB2 PRSS29P
nsv428316 Chr.16:929650 - 1363252 on Build GRCh38 Gain+Loss TPSD1 GNPTG C1QTNF8 TSR3 UNKL BAIAP3 CACNA1H SOX8 SSTR5 UBE2I LMF1 SSTR5-AS1 TPSG1 TPSAB1 LMF1-AS1 TPSB2 PRSS29P
nsv952899 Chr.16:1142501 - 1535899 on Build GRCh38 Deletion TPSD1 C16orf91 GNPTG TSR3 UNKL BAIAP3 CCDC154 CACNA1H PTX4 LOC105371047 TELO2 UBE2I LOC105371045 IFT140 TMEM204 TPSG1 TPSAB1 TPSB2 PRSS29P CLCN7
esv2750328 Chr.16:1356810 - 1356909 on Build GRCh38 Deletion GNPTG
nsv1046314 Chr.16:1238517 - 1426464 on Build GRCh38 Loss TPSD1 C16orf91 GNPTG TPSAB1 TSR3 UNKL BAIAP3 PRSS29P UBE2I
esv3637616 Chr.16:1356693 - 1364925 on Build GRCh38 Gain GNPTG UNKL
esv2750327 Chr.16:1356636 - 1357350 on Build GRCh38 Deletion GNPTG

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More Information


Additional Information:

For this assay, SNP(s) [rs141118929,rs148005707] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

Set Membership:

 Intragenic Intronic Non-exonic DGV Variation

Panther Classification:

Gene Ontology Categories:

Function(s) Process(es)


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