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See other RAB40C CNV Assays ›
Gene Symbol
RAB40C
Assay Reference Genome
Location

Chr.16:610156 on build GRCh38
Cytoband
16p13.3
Assay ID Hs03943903_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 57799

Gene Name:

 RAB40C, member RAS oncogene family

Gene Aliases:

 RARL, RASL8C

Location:

 Chr.16:589357-629273 on Build GRCh38

Assay Gene Location:

 Within Intron 4
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
RAB40C NM_001172663.1 NP_001166134.1
NM_001172664.1 NP_001166135.1
NM_001172665.1 NP_001166136.1
NM_001172666.1 NP_001166137.1
NM_021168.4 NP_066991.3
AY823398.1 AAV83924.1
BC028696.1 AAH28696.1
BG696681.1
BG715678.1
BM545442.1
BQ685517.1
BX442451.2
CX783728.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
dgv4824n54 Chr.16:605686 - 670986 on Build GRCh38 Loss LOC100287175 MCRIP2 LOC105371038 WDR90 WFIKKN1 METTL26 RAB40C RHOT2
nsv833113 Chr.16:506513 - 628160 on Build GRCh38 Loss LOC107987233 PIGQ LOC101929280 MIR5587 PRR35 NHLRC4 MIR3176 CAPN15 LINC00235 RAB40C RAB11FIP3
nsv1040486 Chr.16:600788 - 627854 on Build GRCh38 Gain RAB40C
esv2422427 Chr.16:10001 - 2723164 on Build GRCh38 Duplication CEMP1 TPSG1 SNRNP25 SNHG9 PRSS29P RAB26 CRAMP1 BRICD5 NDUFB10 RPUSD1 PDIA2 SSTR5 CCNF ERVK13-1 NME4 CHTF18 RNPS1 RPL23AP5 EME2 SNORD60 C16orf59 MPG RAB11FIP3 LOC100287175 PGP TBL3 MIR3177 NARFL HBZ WDR90 TPSD1 LOC101929280 MIR3180-5 KCTD5 SYNGR3 LOC105371049 MEIOB NUBP2 WFIKKN1 TMEM8A IFT140 MIR6859-4 LOC107987233 DDX11L10 SNORA10 MIR6767 GNPTG UNKL TSR3 CLCN7 MIR4717 MIR4516 HN1L MIR3677 FBXL16 UBE2I LOC105371184 MIR3178 ABCA17P LOC105371046 MRPS34 AXIN1 MAPK8IP3 WASIR2 C16orf91 PKD1 DNASE1L2 NPRL3 TMEM204 RPL3L SNORA78 LOC729652 MRPL28 RPS2 MIR1225 AMDHD2 RHOT2 TELO2 MIR6768 NTHL1 LOC106660606 LMF1-AS1 TPSAB1 FAM173A RAB40C NME3 MIR662 TRAF7 STUB1 TPSB2 ABCA3 SNHG19 RNF151 PRSS27 MLST8 NHLRC4 ECI1 NOXO1 PTX4 LUC7L SPSB3 RHBDL1 HAGHL LOC105371047 LOC105371038 GFER LOC100134368 MSLN RHBDF1 CCDC154 IGFALS MIR6511B1 LINC00254 NTN3 MCRIP2 LMF1 METRN C1QTNF8 LOC105371045 FAM234A SLC9A3R2 HBM HBA1 LOC107984876 HBA2 HAGH MIR3176 CAPN15 POLR3K MIR940 PRR35 NPW ARHGDIG PRR25 TSC2 MIR5587 HBQ1 HS3ST6 JMJD8 LINC00235 TBC1D24 LOC652276 CASKIN1 E4F1 SOX8 PIGQ SSTR5-AS1 FLJ42627 FAHD1 BAIAP3 MSRB1 PDPK1 METTL26 GNG13 RGS11 WDR24 ATP6V0C DECR2 CCDC78 CACNA1H ZNF598 SNORA64
nsv471063 Chr.16:520623 - 852322 on Build GRCh38 Loss LOC107987233 PRR35 NHLRC4 FBXL16 RPUSD1 RHBDL1 HAGHL PRR25 LOC105371184 MIR5587 LOC105371038 CHTF18 MSLN JMJD8 LINC00235 RAB11FIP3 LOC100287175 PIGQ MCRIP2 NARFL METRN WDR90 METTL26 GNG13 RHOT2 WDR24 LOC101929280 WFIKKN1 MIR3176 CCDC78 CAPN15 FAM173A RAB40C MIR662 STUB1
nsv526903 Chr.16:451362 - 810673 on Build GRCh38 Loss LOC107987233 PRR35 NHLRC4 FBXL16 RPUSD1 RHBDL1 HAGHL PRR25 LOC105371184 MIR5587 LOC105371038 CHTF18 MSLN JMJD8 LINC00235 RAB11FIP3 LOC100287175 PIGQ MCRIP2 NARFL METRN WDR90 METTL26 GNG13 RHOT2 WDR24 LOC101929280 WFIKKN1 MIR3176 CCDC78 CAPN15 FAM173A RAB40C MIR662 STUB1
nsv952898 Chr.16:495001 - 1132900 on Build GRCh38 Deletion LOC107987233 PRR35 NHLRC4 FBXL16 RPUSD1 RHBDL1 HAGHL PRR25 SSTR5 LOC105371184 MIR5587 LOC105371038 CHTF18 MSLN JMJD8 LINC00235 RAB11FIP3 LOC100287175 SOX8 PIGQ SSTR5-AS1 MCRIP2 LMF1 NARFL METRN WDR90 C1QTNF8 METTL26 GNG13 RHOT2 LOC107984876 WDR24 LOC101929280 LMF1-AS1 WFIKKN1 MIR3176 CCDC78 CAPN15 FAM173A RAB40C MIR662 STUB1
dgv4823n54 Chr.16:562698 - 662867 on Build GRCh38 Loss LOC107987233 LOC100287175 PIGQ LOC101929280 MCRIP2 PRR35 NHLRC4 LOC105371038 WDR90 WFIKKN1 METTL26 RAB40C
nsv457304 Chr.16:554554 - 611142 on Build GRCh38 Gain LOC107987233 PIGQ LOC101929280 PRR35 NHLRC4 CAPN15 RAB40C
nsv571012 Chr.16:583354 - 748489 on Build GRCh38 Loss LOC100287175 PIGQ MCRIP2 NARFL METRN WDR90 METTL26 FBXL16 RHOT2 RHBDL1 HAGHL WDR24 LOC101929280 LOC105371184 LOC105371038 WFIKKN1 CCDC78 JMJD8 FAM173A RAB40C STUB1
nsv1160326 Chr.16:580902 - 804689 on Build GRCh38 Duplication FBXL16 RPUSD1 RHBDL1 HAGHL LOC105371184 LOC105371038 CHTF18 MSLN JMJD8 LOC100287175 PIGQ MCRIP2 NARFL METRN WDR90 METTL26 GNG13 RHOT2 WDR24 LOC101929280 WFIKKN1 CCDC78 FAM173A RAB40C MIR662 STUB1
nsv1160325 Chr.16:506925 - 836376 on Build GRCh38 Duplication LOC107987233 PRR35 NHLRC4 FBXL16 RPUSD1 RHBDL1 HAGHL PRR25 LOC105371184 MIR5587 LOC105371038 CHTF18 MSLN JMJD8 LINC00235 RAB11FIP3 LOC100287175 PIGQ MCRIP2 NARFL METRN WDR90 METTL26 GNG13 RHOT2 WDR24 LOC101929280 WFIKKN1 MIR3176 CCDC78 CAPN15 FAM173A RAB40C MIR662 STUB1

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More Information


Set Membership:

 Intragenic Intronic Non-exonic DGV Variation

Gene Ontology Categories:

Function(s) Process(es)


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