Hs03944021_cn

• Gene Symbol: SNAI3
• Assay Reference Genome Location: Chr.16:88685629 on build GRCh38
• Cytoband: 16q24.2

Target Gene Details

• Entrez Gene ID: 333929
• Gene Name: snail family transcriptional repressor 3
• Gene Aliases: SMUC, SNAIL3, ZNF293, Zfp293
• Location: Chr.16:88677682-88686474 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
SNAI3	NM_178310.3			NP_840101.1
	BC041461.1			AAH41461.1
	BC107058.2			AAI07059.1

Target Gene Details

• Entrez Gene ID: 197187
• Gene Name: SNAI3 antisense RNA 1
• Gene Aliases: -
• Location: Chr.16:88663373-88687186 on Build GRCh38
• Assay Gene Location: Within Intron 4

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
SNAI3-AS1	NR_024399.1
	AY203928.1	1	497	AAP34451.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv471113	Chr.16:88650665 - 88764428 on Build GRCh38	Loss	LOC100289580 LOC339059 CYBA PIEZO1 MVD CTU2 SNAI3 RNF166 SNAI3-AS1 MIR4722
dgv3064n100	Chr.16:88683753 - 88846491 on Build GRCh38	Gain	LOC100289580 LOC339059 PIEZO1 LOC107987238 CTU2 SNAI3 GALNS CDT1 RNF166 SNAI3-AS1 APRT MIR4722
nsv1065973	Chr.16:88661146 - 88731220 on Build GRCh38	Loss	LOC100289580 PIEZO1 MVD CTU2 SNAI3 RNF166 SNAI3-AS1 MIR4722
nsv833327	Chr.16:88667431 - 88757621 on Build GRCh38	Loss	LOC100289580 LOC339059 PIEZO1 CTU2 SNAI3 RNF166 SNAI3-AS1 MIR4722
nsv833325	Chr.16:88553738 - 88698194 on Build GRCh38	Loss	IL17C CYBA MVD SNAI3 ZC3H18 RNF166 SNAI3-AS1 ZC3H18-AS1
nsv952070	Chr.16:88257295 - 88780192 on Build GRCh38	Deletion	LOC339059 IL17C CYBA PIEZO1 MVD CTU2 ZC3H18 ZC3H18-AS1 MIR4722 LOC100289580 LOC107984862 ZNF469 SNAI3 MIR5189 RNF166 SNAI3-AS1 ZFPM1
nsv482951	Chr.16:88633593 - 90228345 on Build GRCh38	Loss	IL17C GAS8-AS1 PRDM7 LOC400558 MVD GALNS DBNDD1 CDH15 CHMP1A CPNE7 LOC107987238 SNAI3 TRAPPC2L SPATA33 RNF166 SNAI3-AS1 LOC100287036 DEF8 SPATA2L LOC339059 CBFA2T3 LOC107984817 CTU2 FANCA LOC100129697 LOC105371419 ZNF778 CDT1 CDK10 ZNF276 FAM157C VPS9D1 DPEP1 LOC101927793 LOC105371409 CYBA URAHP LOC101927817 TUBB3 ANKRD11 RPL13 MIR4722 PABPN1L ACSF3 VPS9D1-AS1 LINC00304 SLC22A31 APRT PIEZO1 TCF25 GAS8 LOC105371414 CENPBD1 LOC100289580 TUBB8P7 SNORD68 AFG3L1P SPG7 MC1R SPIRE2
nsv819188	Chr.16:88672556 - 88694874 on Build GRCh38	Gain	SNAI3 SNAI3-AS1

More Information

• Set Membership: Intragenic, Intronic, Non-exonic, DGV Variation

Panther Classification:

Molecular Function -

C2H2 zinc finger transcription factor

Gene Ontology Categories:

Process(es)

negative regulation of transcription from RNA polymerase II promoter
transcription, DNA-templated

Function(s)

RNA polymerase II core promoter proximal region sequence-specific DNA binding
transcription factor activity, RNA polymerase II core promoter proximal region sequence-specific binding
transcriptional repressor activity, RNA polymerase II transcription regulatory region sequence-specific binding
copper ion binding