Genomic Map
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Target Gene Details
Entrez Gene ID: | 64788 |
Gene Name: | lipase maturation factor 1 |
Gene Aliases: |
C16orf26, HMFN1876, JFP11, TMEM112, TMEM112A |
Location: |
Chr.16:853632-981615 on Build GRCh38 |
Assay Gene Location: | Overlaps Intron 17 - Exon 18 |
| Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
|---|---|---|---|---|
| LMF1 | NM_022773.2 | NP_073610.2 | ||
| NR_033645.1 | ||||
| NR_033646.1 | ||||
| XM_006720928.2 | XP_006720991.1 | |||
| XM_006720929.3 | XP_006720992.1 | |||
| XM_011522614.2 | XP_011520916.1 | |||
| XM_011522617.2 | XP_011520919.1 | |||
| XM_017023575.1 | XP_016879064.1 | |||
| XM_017023576.1 | XP_016879065.1 | |||
| XM_017023577.1 | XP_016879066.1 | |||
| XM_017023578.1 | XP_016879067.1 | |||
| XM_017023579.1 | XP_016879068.1 | |||
| XM_017023580.1 | XP_016879069.1 | |||
| AB075873.1 | BAD38655.1 | |||
| AK022743.1 | BAB14218.1 | |||
| AK025955.1 | BAB15295.1 | |||
| AK093050.1 | ||||
| AK125201.1 | ||||
| AK225065.1 | ||||
| AK225406.1 | ||||
| AL832177.1 | ||||
| BC010738.1 | AAH10738.2 |
Target Copy Number Variation Details
DGV Version: |
Release date: 2016-05-15, GRCh GRCh38 |
| Target Variation |
Location | CNV Subtype |
Genes |
|---|---|---|---|
| nsv571046 | Chr.16:828324 - 1202441 on Build GRCh38 | Gain |
 CACNA1H
SSTR5-AS1
SSTR5
LMF1
LMF1-AS1
SOX8
C1QTNF8
LOC107984876
|
| esv2422427 | Chr.16:10001 - 2723164 on Build GRCh38 | Duplication |
TSR3
LOC105371045
LUC7L
AXIN1
NDUFB10
MIR6859-4
ERVK13-1
RNPS1
LOC100287175
KCTD5
SPSB3
NHLRC4
MIR3177
RPUSD1
MIR662
CHTF18
MPG
TPSG1
SNHG9
HN1L
RHOT2
AMDHD2
RGS11
PGP
HBQ1
CAPN15
SNORA78
NPW
FAM173A
TPSAB1
MRPS34
DNASE1L2
SOX8
E4F1
METRN
RHBDF1
CCNF
NARFL
IFT140
WFIKKN1
RPS2
MSLN
MEIOB
DECR2
ECI1
LOC729652
FBXL16
IGFALS
RPL23AP5
FAM234A
POLR3K
LOC107984876
CLCN7
MCRIP2
MSRB1
NTHL1
TPSB2
SLC9A3R2
PKD1
NME4
HBM
ABCA3
SNRNP25
PIGQ
TMEM204
C16orf91
MRPL28
LINC00235
SSTR5-AS1
MIR1225
PRSS27
UBE2I
MIR6768
MIR3178
RHBDL1
BAIAP3
CACNA1H
MIR4516
CEMP1
METTL26
C16orf59
MIR5587
HS3ST6
SNHG19
LINC00254
LOC106660606
SNORA10
ATP6V0C
LOC105371047
TPSD1
HBA1
RAB11FIP3
TBC1D24
MIR3176
ZNF598
ABCA17P
LOC105371184
SSTR5
GFER
PDPK1
CCDC78
CRAMP1
NUBP2
DDX11L10
LOC100134368
BRICD5
PRR35
FLJ42627
HBZ
EME2
SYNGR3
NPRL3
SNORD60
LMF1
LMF1-AS1
WDR24
WDR90
C1QTNF8
CCDC154
MIR6767
WASIR2
JMJD8
PRSS29P
CASKIN1
TBL3
NME3
MIR6511B1
HAGHL
TELO2
MIR3180-5
LOC652276
RNF151
MIR4717
ARHGDIG
NOXO1
MIR940
PRR25
MLST8
LOC101929280
NTN3
PTX4
GNPTG
TMEM8A
RAB40C
STUB1
GNG13
LOC107987233
SNORA64
RAB26
LOC105371046
PDIA2
MAPK8IP3
TSC2
FAHD1
HBA2
MIR3677
RPL3L
HAGH
LOC105371049
UNKL
TRAF7
LOC105371038
|
| esv3637586 | Chr.16:798995 - 892120 on Build GRCh38 | Loss |
LMF1
PRR25
GNG13
|
| esv3637595 | Chr.16:859147 - 890552 on Build GRCh38 | Loss |
LMF1
|
| nsv1046349 | Chr.16:819378 - 942590 on Build GRCh38 | Loss |
LMF1
LMF1-AS1
LOC107984876
|
| nsv952898 | Chr.16:495001 - 1132900 on Build GRCh38 | Deletion |
RHBDL1
METRN
METTL26
JMJD8
MIR5587
NARFL
LOC100287175
WFIKKN1
HAGHL
NHLRC4
RPUSD1
MSLN
MIR662
CHTF18
RAB11FIP3
FBXL16
PRR25
LOC101929280
MIR3176
LOC107984876
RHOT2
MCRIP2
LOC105371184
SSTR5
CCDC78
CAPN15
RAB40C
STUB1
PIGQ
GNG13
LOC107987233
PRR35
FAM173A
LINC00235
SSTR5-AS1
LMF1
LMF1-AS1
WDR24
SOX8
WDR90
C1QTNF8
LOC105371038
|
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Additional Information:
For this assay, SNP(s) [rs200343204] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.
Set Membership: |
Intragenic
Non-exonic
DGV Variation
|
Gene Ontology Categories:
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