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See other RAB40C CNV Assays ›
Gene Symbol
RAB40C
Assay Reference Genome
Location

Chr.16:595494 on build GRCh38
Cytoband
16p13.3
Assay ID Hs03949938_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 57799

Gene Name:

 RAB40C, member RAS oncogene family

Gene Aliases:

 RARL, RASL8C

Location:

 Chr.16:589357-629273 on Build GRCh38

Assay Gene Location:

 Within Intron 4
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
RAB40C NM_001172663.1 NP_001166134.1
NM_001172664.1 NP_001166135.1
NM_001172665.1 NP_001166136.1
NM_001172666.1 NP_001166137.1
NM_021168.4 NP_066991.3
AY823398.1 AAV83924.1
BC028696.1 AAH28696.1
BG696681.1
BG715678.1
BM545442.1
BQ685517.1
BX442451.2
CX783728.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv833113 Chr.16:506513 - 628160 on Build GRCh38 Loss MIR5587 LINC00235 LOC107987233 LOC101929280 PRR35 RAB40C CAPN15 NHLRC4 PIGQ RAB11FIP3 MIR3176
esv2422427 Chr.16:10001 - 2723164 on Build GRCh38 Duplication TPSG1 MCRIP2 MSLN MIR6859-4 LUC7L MIR3180-5 HBM MIR3677 SNHG19 MRPL28 NPW RAB40C CCNF CAPN15 WDR24 GFER UNKL GNG13 SSTR5 PRR25 SLC9A3R2 MIR3178 HBA2 PGP WFIKKN1 PTX4 STUB1 MIR3177 MLST8 PDPK1 TPSD1 RAB11FIP3 DDX11L10 RPL23AP5 C1QTNF8 SNHG9 CASKIN1 LOC105371184 TSR3 NTN3 SNORD60 MAPK8IP3 LOC729652 FLJ42627 FAM234A ABCA17P NPRL3 HBZ CCDC78 NME3 LOC105371038 HAGH TMEM204 JMJD8 MEIOB SNORA78 BAIAP3 FBXL16 PRSS27 PDIA2 LOC107984876 NUBP2 MIR662 LMF1-AS1 SNORA10 LOC100287175 CCDC154 LOC100134368 PRSS29P TMEM8A NTHL1 IFT140 MIR6767 MIR3176 CLCN7 RPS2 RPL3L IGFALS MIR6768 TBC1D24 CRAMP1 NOXO1 SNRNP25 WASIR2 LINC00254 LMF1 TBL3 RNF151 RNPS1 LOC101929280 WDR90 TSC2 MRPS34 TRAF7 MIR4717 DECR2 LOC105371046 ABCA3 PKD1 LOC105371047 HAGHL RAB26 HS3ST6 NHLRC4 FAHD1 DNASE1L2 RHOT2 NME4 HN1L NDUFB10 LOC105371049 AXIN1 TELO2 RGS11 ZNF598 MIR6511B1 GNPTG RHBDF1 AMDHD2 LOC106660606 METTL26 ECI1 KCTD5 MIR5587 LINC00235 PRR35 HBA1 MIR1225 RPUSD1 CEMP1 POLR3K C16orf91 METRN EME2 SSTR5-AS1 MIR4516 BRICD5 PIGQ MSRB1 SPSB3 ARHGDIG ATP6V0C SOX8 LOC105371045 UBE2I RHBDL1 MPG HBQ1 CHTF18 SYNGR3 NARFL MIR940 FAM173A LOC107987233 TPSAB1 SNORA64 E4F1 LOC652276 ERVK13-1 CACNA1H C16orf59 TPSB2
nsv471063 Chr.16:520623 - 852322 on Build GRCh38 Loss MIR5587 LINC00235 LOC105371184 PRR35 MCRIP2 MSLN RPUSD1 METRN CCDC78 LOC105371038 LOC101929280 RAB40C WDR90 CAPN15 WDR24 JMJD8 GNG13 PIGQ PRR25 FBXL16 WFIKKN1 HAGHL RHBDL1 CHTF18 NHLRC4 STUB1 RHOT2 NARFL FAM173A MIR662 LOC107987233 LOC100287175 METTL26 RAB11FIP3 MIR3176
nsv526903 Chr.16:451362 - 810673 on Build GRCh38 Loss MIR5587 LINC00235 LOC105371184 PRR35 MCRIP2 MSLN RPUSD1 METRN CCDC78 LOC105371038 LOC101929280 RAB40C WDR90 CAPN15 WDR24 JMJD8 GNG13 PIGQ PRR25 FBXL16 WFIKKN1 HAGHL RHBDL1 CHTF18 NHLRC4 STUB1 RHOT2 NARFL FAM173A MIR662 LOC107987233 LOC100287175 METTL26 RAB11FIP3 MIR3176
nsv952898 Chr.16:495001 - 1132900 on Build GRCh38 Deletion MIR5587 LINC00235 LOC105371184 PRR35 MCRIP2 MSLN RPUSD1 LMF1 METRN CCDC78 LOC105371038 LOC101929280 RAB40C WDR90 CAPN15 SSTR5-AS1 WDR24 JMJD8 GNG13 SSTR5 PIGQ PRR25 FBXL16 SOX8 WFIKKN1 HAGHL RHBDL1 CHTF18 NHLRC4 STUB1 LOC107984876 RHOT2 NARFL FAM173A MIR662 LOC107987233 LMF1-AS1 LOC100287175 METTL26 RAB11FIP3 MIR3176 C1QTNF8
dgv4823n54 Chr.16:562698 - 662867 on Build GRCh38 Loss LOC107987233 LOC105371038 LOC101929280 PRR35 WFIKKN1 RAB40C WDR90 MCRIP2 LOC100287175 NHLRC4 PIGQ METTL26
nsv457304 Chr.16:554554 - 611142 on Build GRCh38 Gain LOC107987233 LOC101929280 PRR35 RAB40C CAPN15 NHLRC4 PIGQ
nsv571012 Chr.16:583354 - 748489 on Build GRCh38 Loss LOC105371184 WFIKKN1 HAGHL MCRIP2 RHBDL1 STUB1 RHOT2 NARFL METRN CCDC78 FAM173A LOC105371038 LOC101929280 RAB40C WDR90 WDR24 JMJD8 LOC100287175 PIGQ METTL26 FBXL16
nsv1160326 Chr.16:580902 - 804689 on Build GRCh38 Duplication LOC105371184 MCRIP2 MSLN RPUSD1 METRN CCDC78 LOC105371038 LOC101929280 RAB40C WDR90 WDR24 JMJD8 GNG13 PIGQ FBXL16 WFIKKN1 HAGHL RHBDL1 CHTF18 STUB1 RHOT2 NARFL FAM173A MIR662 LOC100287175 METTL26
nsv1160325 Chr.16:506925 - 836376 on Build GRCh38 Duplication MIR5587 LINC00235 LOC105371184 PRR35 MCRIP2 MSLN RPUSD1 METRN CCDC78 LOC105371038 LOC101929280 RAB40C WDR90 CAPN15 WDR24 JMJD8 GNG13 PIGQ PRR25 FBXL16 WFIKKN1 HAGHL RHBDL1 CHTF18 NHLRC4 STUB1 RHOT2 NARFL FAM173A MIR662 LOC107987233 LOC100287175 METTL26 RAB11FIP3 MIR3176

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More Information


Set Membership:

 Intragenic Intronic Non-exonic DGV Variation

Gene Ontology Categories:

Function(s) Process(es)


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