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See other RAB40C CNV Assays ›
Gene Symbol
RAB40C
Assay Reference Genome
Location

Chr.16:616764 on build GRCh38
Cytoband
16p13.3
Assay ID Hs03951152_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 57799

Gene Name:

 RAB40C, member RAS oncogene family

Gene Aliases:

 RARL, RASL8C

Location:

 Chr.16:589357-629273 on Build GRCh38

Assay Gene Location:

 Within Intron 4
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
RAB40C NM_001172663.1 NP_001166134.1
NM_001172664.1 NP_001166135.1
NM_001172665.1 NP_001166136.1
NM_001172666.1 NP_001166137.1
NM_021168.4 NP_066991.3
AY823398.1 AAV83924.1
BC028696.1 AAH28696.1
BG696681.1
BG715678.1
BM545442.1
BQ685517.1
BX442451.2
CX783728.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
dgv4824n54 Chr.16:605686 - 670986 on Build GRCh38 Loss WFIKKN1 METTL26 WDR90 RHOT2 MCRIP2 LOC105371038 LOC100287175 RAB40C
nsv833113 Chr.16:506513 - 628160 on Build GRCh38 Loss PRR35 NHLRC4 MIR5587 CAPN15 PIGQ LOC107987233 MIR3176 RAB11FIP3 LOC101929280 LINC00235 RAB40C
nsv1040486 Chr.16:600788 - 627854 on Build GRCh38 Gain RAB40C
esv2422427 Chr.16:10001 - 2723164 on Build GRCh38 Duplication NPRL3 LUC7L WDR90 IGFALS RHOT2 MIR6859-4 MIR662 NARFL MIR3677 FBXL16 BRICD5 NPW CLCN7 MEIOB RNPS1 MLST8 LOC100134368 NTN3 PRR25 HBQ1 SLC9A3R2 SNRNP25 EME2 LOC107984876 MSRB1 UNKL SNORA64 MRPL28 MIR3176 MIR4516 PKD1 LOC105371049 LOC105371038 MAPK8IP3 LOC106660606 MIR940 LMF1-AS1 LINC00254 LOC107987233 FLJ42627 TSC2 HBM HBZ MIR3178 SNHG9 RPL3L ERVK13-1 MRPS34 SNORA10 NHLRC4 NOXO1 PDPK1 PRSS29P MIR6767 TPSD1 TPSAB1 GNPTG CEMP1 FAHD1 TPSG1 JMJD8 CASKIN1 RAB11FIP3 PDIA2 GFER MIR3180-5 ZNF598 MIR1225 RAB40C SNHG19 PRR35 RGS11 HN1L TMEM8A DNASE1L2 METTL26 MCRIP2 C1QTNF8 PGP WASIR2 SSTR5-AS1 NDUFB10 WDR24 C16orf91 MIR5587 SSTR5 LOC105371047 NUBP2 CACNA1H CAPN15 HBA1 DDX11L10 LOC100287175 ATP6V0C WFIKKN1 POLR3K LOC652276 TSR3 PIGQ SPSB3 RAB26 TRAF7 LOC101929280 RPL23AP5 DECR2 NTHL1 LOC729652 CCNF RPUSD1 MIR3177 SNORD60 TPSB2 ARHGDIG ABCA3 KCTD5 AXIN1 NME4 C16orf59 MSLN MPG CCDC154 MIR4717 LOC105371046 PRSS27 RHBDL1 LOC105371184 RNF151 MIR6768 MIR6511B1 GNG13 HS3ST6 E4F1 SOX8 LOC105371045 SYNGR3 ABCA17P LMF1 CCDC78 BAIAP3 RPS2 NME3 PTX4 UBE2I SNORA78 AMDHD2 STUB1 FAM173A ECI1 TMEM204 LINC00235 RHBDF1 TELO2 IFT140 CHTF18 CRAMP1 HAGHL TBC1D24 TBL3 FAM234A HBA2 HAGH METRN
nsv471063 Chr.16:520623 - 852322 on Build GRCh38 Loss MIR5587 WDR90 CAPN15 LOC107987233 RHBDL1 RHOT2 LOC105371184 MIR662 NARFL GNG13 LOC100287175 FBXL16 NHLRC4 WFIKKN1 PIGQ LOC101929280 CCDC78 PRR25 JMJD8 STUB1 FAM173A RAB11FIP3 LINC00235 RPUSD1 CHTF18 RAB40C PRR35 HAGHL METTL26 MIR3176 MCRIP2 MSLN METRN LOC105371038 WDR24
nsv526903 Chr.16:451362 - 810673 on Build GRCh38 Loss MIR5587 WDR90 CAPN15 LOC107987233 RHBDL1 RHOT2 LOC105371184 MIR662 NARFL GNG13 LOC100287175 FBXL16 NHLRC4 WFIKKN1 PIGQ LOC101929280 CCDC78 PRR25 JMJD8 STUB1 FAM173A RAB11FIP3 LINC00235 RPUSD1 CHTF18 RAB40C PRR35 HAGHL METTL26 MIR3176 MCRIP2 MSLN METRN LOC105371038 WDR24
nsv952898 Chr.16:495001 - 1132900 on Build GRCh38 Deletion MIR5587 WDR90 SSTR5 LMF1-AS1 CAPN15 LOC107987233 RHBDL1 RHOT2 LOC105371184 MIR662 NARFL GNG13 LOC100287175 FBXL16 NHLRC4 WFIKKN1 SOX8 PIGQ LOC101929280 LMF1 CCDC78 PRR25 JMJD8 STUB1 FAM173A RAB11FIP3 LINC00235 LOC107984876 RPUSD1 CHTF18 RAB40C PRR35 HAGHL METTL26 MIR3176 MCRIP2 MSLN C1QTNF8 METRN SSTR5-AS1 LOC105371038 WDR24
dgv4823n54 Chr.16:562698 - 662867 on Build GRCh38 Loss PRR35 NHLRC4 WFIKKN1 METTL26 WDR90 PIGQ LOC107987233 MCRIP2 LOC101929280 LOC105371038 LOC100287175 RAB40C
nsv571012 Chr.16:583354 - 748489 on Build GRCh38 Loss JMJD8 WDR90 STUB1 RHBDL1 RHOT2 FAM173A LOC105371184 NARFL LOC100287175 FBXL16 RAB40C HAGHL WFIKKN1 METTL26 PIGQ MCRIP2 LOC101929280 CCDC78 METRN LOC105371038 WDR24
nsv1160326 Chr.16:580902 - 804689 on Build GRCh38 Duplication WDR90 RHBDL1 RHOT2 LOC105371184 MIR662 NARFL GNG13 LOC100287175 FBXL16 WFIKKN1 PIGQ LOC101929280 CCDC78 JMJD8 STUB1 FAM173A RPUSD1 CHTF18 RAB40C HAGHL METTL26 MCRIP2 MSLN METRN LOC105371038 WDR24
nsv1160325 Chr.16:506925 - 836376 on Build GRCh38 Duplication MIR5587 WDR90 CAPN15 LOC107987233 RHBDL1 RHOT2 LOC105371184 MIR662 NARFL GNG13 LOC100287175 FBXL16 NHLRC4 WFIKKN1 PIGQ LOC101929280 CCDC78 PRR25 JMJD8 STUB1 FAM173A RAB11FIP3 LINC00235 RPUSD1 CHTF18 RAB40C PRR35 HAGHL METTL26 MIR3176 MCRIP2 MSLN METRN LOC105371038 WDR24

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More Information


Set Membership:

 Intragenic Intronic Non-exonic DGV Variation

Gene Ontology Categories:

Function(s) Process(es)


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