Genomic Map
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Target Gene Details
Entrez Gene ID: | 64788 |
Gene Name: | lipase maturation factor 1 |
Gene Aliases: |
C16orf26, HMFN1876, JFP11, TMEM112, TMEM112A |
Location: |
Chr.16:853632-981615 on Build GRCh38 |
Assay Gene Location: | Within Exon 21 |
| Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
|---|---|---|---|---|
| LMF1 | NM_022773.2 | NP_073610.2 | ||
| NR_033645.1 | ||||
| NR_033646.1 | ||||
| XM_006720928.2 | XP_006720991.1 | |||
| XM_006720929.3 | XP_006720992.1 | |||
| XM_011522617.2 | XP_011520919.1 | |||
| XM_017023575.1 | 11 | 2351 | XP_016879064.1 | |
| XM_017023576.1 | XP_016879065.1 | |||
| XM_017023577.1 | XP_016879066.1 | |||
| XM_017023578.1 | XP_016879067.1 | |||
| XM_017023579.1 | XP_016879068.1 | |||
| XM_017023580.1 | XP_016879069.1 | |||
| AB075873.1 | BAD38655.1 | |||
| AK022743.1 | BAB14218.1 | |||
| AK025955.1 | BAB15295.1 | |||
| AK093050.1 | ||||
| AK125201.1 | ||||
| AK225065.1 | ||||
| AK225406.1 | ||||
| AL832177.1 | ||||
| BC010738.1 | AAH10738.2 |
Target Copy Number Variation Details
DGV Version: |
Release date: 2016-05-15, GRCh GRCh38 |
| Target Variation |
Location | CNV Subtype |
Genes |
|---|---|---|---|
| nsv571046 | Chr.16:828324 - 1202441 on Build GRCh38 | Gain |
 LMF1
LMF1-AS1
SOX8
CACNA1H
C1QTNF8
SSTR5-AS1
SSTR5
LOC107984876
|
| esv2422427 | Chr.16:10001 - 2723164 on Build GRCh38 | Duplication |
C16orf59
PIGQ
RAB40C
SOX8
NTN3
RPL3L
PRR35
SNORA64
UBE2I
LINC00235
RGS11
LOC100287175
NPW
FLJ42627
METTL26
STUB1
ABCA3
MPG
RNPS1
PKD1
LOC100134368
HBA2
PRSS27
HN1L
MIR3178
PRR25
LOC105371046
SNORA78
RHBDF1
IFT140
MIR5587
CHTF18
CASKIN1
UNKL
MIR6768
SNHG9
LINC00254
TBL3
MRPL28
MIR6511B1
ABCA17P
PDIA2
FAHD1
WFIKKN1
SNORD60
AXIN1
LOC105371038
FAM234A
CCNF
CRAMP1
NOXO1
TMEM8A
NDUFB10
GNPTG
HBZ
MIR3180-5
LMF1
MIR1225
HBM
DECR2
BAIAP3
LUC7L
CACNA1H
MIR6859-4
SSTR5-AS1
TPSD1
NHLRC4
PRSS29P
CAPN15
HAGH
LOC105371049
JMJD8
MSLN
FBXL16
LOC107984876
SNORA10
ERVK13-1
ARHGDIG
HAGHL
C1QTNF8
CLCN7
GNG13
SNRNP25
RAB26
HS3ST6
WDR90
LOC729652
KCTD5
E4F1
LOC101929280
SSTR5
LOC652276
DDX11L10
MIR3176
PGP
AMDHD2
NPRL3
SNHG19
EME2
ECI1
NME4
ATP6V0C
HBA1
C16orf91
PTX4
LOC105371047
NUBP2
TBC1D24
WASIR2
RHOT2
LOC105371184
MIR6767
MIR3177
SPSB3
BRICD5
IGFALS
MAPK8IP3
NTHL1
DNASE1L2
MIR4717
MSRB1
GFER
SYNGR3
LOC105371045
RNF151
MLST8
PDPK1
ZNF598
FAM173A
TPSB2
METRN
POLR3K
RPUSD1
LOC107987233
MIR662
TSR3
MCRIP2
LMF1-AS1
NARFL
TELO2
RPS2
RPL23AP5
MRPS34
NME3
TMEM204
TPSAB1
RHBDL1
MIR3677
CCDC154
CCDC78
LOC106660606
SLC9A3R2
RAB11FIP3
TPSG1
MIR4516
TSC2
WDR24
MIR940
MEIOB
HBQ1
TRAF7
CEMP1
|
| esv3637586 | Chr.16:798995 - 892120 on Build GRCh38 | Loss |
LMF1
PRR25
GNG13
|
| esv3637595 | Chr.16:859147 - 890552 on Build GRCh38 | Loss |
LMF1
|
| nsv1704 | Chr.16:836423 - 867931 on Build GRCh38 | Insertion |
LMF1
|
| nsv1046349 | Chr.16:819378 - 942590 on Build GRCh38 | Loss |
LMF1
LMF1-AS1
LOC107984876
|
| nsv9326 | Chr.16:856661 - 867235 on Build GRCh38 | Loss |
LMF1
|
| nsv952898 | Chr.16:495001 - 1132900 on Build GRCh38 | Deletion |
LOC105371038
PIGQ
WDR90
RAB40C
SOX8
PRR35
LOC101929280
LINC00235
FAM173A
SSTR5
METRN
LOC100287175
RPUSD1
LOC107987233
MIR662
METTL26
LMF1
MCRIP2
STUB1
LMF1-AS1
NARFL
MIR3176
SSTR5-AS1
NHLRC4
RHBDL1
CCDC78
PRR25
CAPN15
JMJD8
MSLN
MIR5587
CHTF18
FBXL16
RAB11FIP3
LOC107984876
WDR24
RHOT2
LOC105371184
HAGHL
C1QTNF8
WFIKKN1
GNG13
|
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Additional Information:
For this assay, SNP(s) [rs111774320] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.
Set Membership: |
Intragenic
Exonic
DGV Variation
|
Gene Ontology Categories:
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