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See other RAB40C CNV Assays ›
Gene Symbol
RAB40C
Assay Reference Genome
Location

Chr.16:606065 on build GRCh38
Cytoband
16p13.3
Assay ID Hs03953242_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 57799

Gene Name:

 RAB40C, member RAS oncogene family

Gene Aliases:

 RARL, RASL8C

Location:

 Chr.16:589357-629273 on Build GRCh38

Assay Gene Location:

 Within Intron 4
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
RAB40C NM_001172663.1 NP_001166134.1
NM_001172664.1 NP_001166135.1
NM_001172665.1 NP_001166136.1
NM_001172666.1 NP_001166137.1
NM_021168.4 NP_066991.3
AY823398.1 AAV83924.1
BC028696.1 AAH28696.1
BG696681.1
BG715678.1
BM545442.1
BQ685517.1
BX442451.2
CX783728.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
dgv4824n54 Chr.16:605686 - 670986 on Build GRCh38 Loss MCRIP2 RAB40C WDR90 WFIKKN1 METTL26 RHOT2 LOC105371038 LOC100287175
nsv833113 Chr.16:506513 - 628160 on Build GRCh38 Loss RAB40C CAPN15 MIR3176 PRR35 RAB11FIP3 NHLRC4 MIR5587 PIGQ LOC107987233 LINC00235 LOC101929280
nsv1040486 Chr.16:600788 - 627854 on Build GRCh38 Gain RAB40C
esv2422427 Chr.16:10001 - 2723164 on Build GRCh38 Duplication CHTF18 TMEM8A NUBP2 MIR6768 HBQ1 SNHG9 LMF1 IFT140 PRSS27 CASKIN1 TBL3 FBXL16 HAGHL LOC729652 MIR662 LUC7L RHOT2 C16orf91 AXIN1 METRN MRPL28 NDUFB10 HAGH MSRB1 LOC100134368 LOC105371047 TRAF7 ERVK13-1 SNRNP25 KCTD5 MEIOB TPSB2 TELO2 NARFL ARHGDIG BRICD5 HN1L RPL3L C1QTNF8 POLR3K ATP6V0C CEMP1 LOC107984876 FAM234A RPL23AP5 NTHL1 RHBDL1 NPRL3 MIR3180-5 PRR25 RNPS1 TPSAB1 CAPN15 CCDC78 PTX4 WASIR2 TBC1D24 NHLRC4 ABCA3 UNKL ZNF598 NTN3 MIR4717 PDIA2 HBZ LOC106660606 SYNGR3 MCRIP2 CLCN7 LOC105371045 MLST8 CACNA1H WDR90 SNORA78 NPW DECR2 PGP RPS2 LOC105371038 SPSB3 LMF1-AS1 FAHD1 BAIAP3 SNORA64 RHBDF1 RNF151 MIR6859-4 SNHG19 LINC00235 MIR1225 LINC00254 RAB40C SNORD60 MRPS34 NME4 ABCA17P MIR3177 LOC101929280 EME2 HBA1 TSC2 NOXO1 PKD1 NME3 LOC105371049 MIR3677 STUB1 UBE2I GNPTG METTL26 RAB11FIP3 MPG LOC105371184 PIGQ LOC107987233 CRAMP1 PRSS29P SLC9A3R2 MIR6511B1 RAB26 SSTR5 MIR4516 TSR3 HBA2 MIR3178 MIR3176 TPSG1 WFIKKN1 DNASE1L2 SNORA10 HBM LOC652276 LOC105371046 SSTR5-AS1 TPSD1 GFER LOC100287175 PDPK1 DDX11L10 FAM173A MIR6767 CCDC154 IGFALS MAPK8IP3 AMDHD2 RGS11 E4F1 JMJD8 GNG13 MSLN RPUSD1 MIR5587 FLJ42627 HS3ST6 SOX8 ECI1 MIR940 PRR35 WDR24 CCNF C16orf59 TMEM204
nsv471063 Chr.16:520623 - 852322 on Build GRCh38 Loss RAB40C MIR3176 CHTF18 WFIKKN1 RHBDL1 PRR25 FBXL16 LOC101929280 LOC100287175 HAGHL FAM173A CAPN15 MIR662 CCDC78 RHOT2 NHLRC4 METRN JMJD8 STUB1 MCRIP2 GNG13 MSLN WDR90 RPUSD1 METTL26 RAB11FIP3 MIR5587 LOC105371184 PIGQ LOC107987233 LOC105371038 NARFL PRR35 WDR24 LINC00235
nsv526903 Chr.16:451362 - 810673 on Build GRCh38 Loss RAB40C MIR3176 CHTF18 WFIKKN1 RHBDL1 PRR25 FBXL16 LOC101929280 LOC100287175 HAGHL FAM173A CAPN15 MIR662 CCDC78 RHOT2 NHLRC4 METRN JMJD8 STUB1 MCRIP2 GNG13 MSLN WDR90 RPUSD1 METTL26 RAB11FIP3 MIR5587 LOC105371184 PIGQ LOC107987233 LOC105371038 NARFL PRR35 WDR24 LINC00235
nsv952898 Chr.16:495001 - 1132900 on Build GRCh38 Deletion RAB40C MIR3176 CHTF18 LOC107984876 WFIKKN1 LMF1 RHBDL1 PRR25 SSTR5-AS1 FBXL16 LOC101929280 LOC100287175 HAGHL FAM173A CAPN15 MIR662 CCDC78 RHOT2 NHLRC4 METRN JMJD8 STUB1 MCRIP2 GNG13 MSLN WDR90 RPUSD1 METTL26 RAB11FIP3 MIR5587 LOC105371184 PIGQ SOX8 LOC107987233 LOC105371038 NARFL PRR35 LMF1-AS1 WDR24 SSTR5 LINC00235 C1QTNF8
dgv4823n54 Chr.16:562698 - 662867 on Build GRCh38 Loss MCRIP2 RAB40C PRR35 WDR90 WFIKKN1 METTL26 NHLRC4 PIGQ LOC107987233 LOC105371038 LOC101929280 LOC100287175
nsv457304 Chr.16:554554 - 611142 on Build GRCh38 Gain RAB40C CAPN15 PRR35 NHLRC4 PIGQ LOC107987233 LOC101929280
nsv571012 Chr.16:583354 - 748489 on Build GRCh38 Loss MCRIP2 RAB40C WDR90 WFIKKN1 METTL26 LOC105371184 RHBDL1 PIGQ FBXL16 LOC105371038 LOC101929280 LOC100287175 HAGHL FAM173A NARFL CCDC78 WDR24 RHOT2 METRN JMJD8 STUB1
nsv1160326 Chr.16:580902 - 804689 on Build GRCh38 Duplication RAB40C CHTF18 WFIKKN1 RHBDL1 FBXL16 LOC101929280 LOC100287175 HAGHL FAM173A MIR662 CCDC78 RHOT2 METRN JMJD8 STUB1 MCRIP2 GNG13 MSLN WDR90 RPUSD1 METTL26 LOC105371184 PIGQ LOC105371038 NARFL WDR24
nsv1160325 Chr.16:506925 - 836376 on Build GRCh38 Duplication RAB40C MIR3176 CHTF18 WFIKKN1 RHBDL1 PRR25 FBXL16 LOC101929280 LOC100287175 HAGHL FAM173A CAPN15 MIR662 CCDC78 RHOT2 NHLRC4 METRN JMJD8 STUB1 MCRIP2 GNG13 MSLN WDR90 RPUSD1 METTL26 RAB11FIP3 MIR5587 LOC105371184 PIGQ LOC107987233 LOC105371038 NARFL PRR35 WDR24 LINC00235

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More Information


Set Membership:

 Intragenic Intronic Non-exonic DGV Variation

Gene Ontology Categories:

Function(s) Process(es)


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