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See other RAB40C CNV Assays ›
Gene Symbol
RAB40C
Assay Reference Genome
Location

Chr.16:590580 on build GRCh38
Cytoband
16p13.3
Assay ID Hs03953994_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 57799

Gene Name:

 RAB40C, member RAS oncogene family

Gene Aliases:

 RARL, RASL8C

Location:

 Chr.16:589357-629273 on Build GRCh38

Assay Gene Location:

 Within Intron 4
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
RAB40C NM_001172663.1 NP_001166134.1
NM_001172664.1 NP_001166135.1
NM_001172665.1 NP_001166136.1
NM_001172666.1 NP_001166137.1
NM_021168.4 NP_066991.3
AY823398.1 AAV83924.1
BC028696.1 AAH28696.1
BG696681.1
BG715678.1
BM545442.1
BQ685517.1
BX442451.2
CX783728.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv833113 Chr.16:506513 - 628160 on Build GRCh38 Loss MIR3176 PRR35 LOC107987233 RAB40C NHLRC4 MIR5587 LINC00235 CAPN15 RAB11FIP3 PIGQ LOC101929280
esv2422427 Chr.16:10001 - 2723164 on Build GRCh38 Duplication MIR3176 TSC2 NPRL3 SNORA78 WDR90 LOC729652 MIR3677 NDUFB10 POLR3K ARHGDIG SNORA10 CRAMP1 MIR3178 SSTR5-AS1 MIR662 WDR24 RAB26 GNPTG BRICD5 MAPK8IP3 HBA2 UNKL NHLRC4 MSLN SNORA64 FBXL16 TMEM204 DECR2 AMDHD2 MIR3177 TPSAB1 SLC9A3R2 NTHL1 TBC1D24 CHTF18 MIR4516 CAPN15 LOC105371047 SNHG9 PKD1 HAGHL LOC105371046 LOC101929280 MIR3180-5 PGP TELO2 LOC105371045 MIR6767 HBM DDX11L10 FAM173A TPSG1 RPUSD1 MCRIP2 PRR35 FAM234A MSRB1 METTL26 PDIA2 ABCA3 LMF1-AS1 DNASE1L2 C16orf59 SNRNP25 HBQ1 SYNGR3 LOC107987233 PRSS27 MRPS34 TRAF7 RPL3L SPSB3 E4F1 ZNF598 PIGQ MIR6768 FLJ42627 HAGH C1QTNF8 CACNA1H MIR1225 LOC105371038 SNHG19 RAB40C RHBDL1 MIR4717 LOC100287175 HBA1 RNF151 HS3ST6 MLST8 MPG ERVK13-1 LINC00235 RHBDF1 NME4 JMJD8 MRPL28 ATP6V0C MIR6859-4 TSR3 GFER GNG13 TPSD1 PRSS29P NPW RHOT2 NTN3 SNORD60 IGFALS NOXO1 LMF1 MIR5587 CCDC154 PTX4 MIR6511B1 MIR940 RPL23AP5 FAHD1 LOC106660606 TBL3 UBE2I TMEM8A HBZ EME2 ABCA17P NUBP2 WASIR2 SOX8 LOC105371049 LOC652276 AXIN1 LOC107984876 MEIOB METRN CLCN7 NARFL NME3 PRR25 BAIAP3 WFIKKN1 LINC00254 LUC7L SSTR5 CCNF CCDC78 C16orf91 STUB1 IFT140 ECI1 LOC100134368 HN1L TPSB2 RAB11FIP3 CEMP1 PDPK1 LOC105371184 KCTD5 RPS2 CASKIN1 RNPS1 RGS11
nsv471063 Chr.16:520623 - 852322 on Build GRCh38 Loss MIR3176 LOC105371038 RAB40C RHBDL1 WDR90 LOC100287175 HAGHL LOC101929280 MIR662 LINC00235 WDR24 METRN JMJD8 NARFL FAM173A RPUSD1 MCRIP2 PRR35 PRR25 METTL26 GNG13 NHLRC4 MSLN WFIKKN1 FBXL16 RHOT2 CCDC78 LOC107987233 STUB1 CHTF18 MIR5587 CAPN15 RAB11FIP3 LOC105371184 PIGQ
nsv526903 Chr.16:451362 - 810673 on Build GRCh38 Loss MIR3176 LOC105371038 RAB40C RHBDL1 WDR90 LOC100287175 HAGHL LOC101929280 MIR662 LINC00235 WDR24 METRN JMJD8 NARFL FAM173A RPUSD1 MCRIP2 PRR35 PRR25 METTL26 GNG13 NHLRC4 MSLN WFIKKN1 FBXL16 RHOT2 CCDC78 LOC107987233 STUB1 CHTF18 MIR5587 CAPN15 RAB11FIP3 LOC105371184 PIGQ
nsv952898 Chr.16:495001 - 1132900 on Build GRCh38 Deletion MIR3176 LOC105371038 RAB40C RHBDL1 WDR90 LOC100287175 HAGHL LOC101929280 SOX8 SSTR5-AS1 LOC107984876 MIR662 LINC00235 WDR24 METRN JMJD8 NARFL FAM173A RPUSD1 MCRIP2 PRR35 PRR25 METTL26 GNG13 NHLRC4 MSLN LMF1-AS1 WFIKKN1 FBXL16 RHOT2 SSTR5 CCDC78 LOC107987233 LMF1 STUB1 CHTF18 MIR5587 CAPN15 RAB11FIP3 LOC105371184 PIGQ C1QTNF8
dgv4823n54 Chr.16:562698 - 662867 on Build GRCh38 Loss PRR35 LOC107987233 LOC105371038 METTL26 RAB40C WDR90 NHLRC4 LOC100287175 WFIKKN1 PIGQ LOC101929280 MCRIP2
nsv457304 Chr.16:554554 - 611142 on Build GRCh38 Gain PRR35 LOC107987233 RAB40C NHLRC4 CAPN15 PIGQ LOC101929280
nsv571012 Chr.16:583354 - 748489 on Build GRCh38 Loss LOC105371038 METTL26 RAB40C RHBDL1 WDR90 LOC100287175 WFIKKN1 FBXL16 RHOT2 HAGHL LOC101929280 CCDC78 STUB1 WDR24 METRN JMJD8 LOC105371184 NARFL PIGQ FAM173A MCRIP2
nsv1160326 Chr.16:580902 - 804689 on Build GRCh38 Duplication LOC105371038 RAB40C RHBDL1 WDR90 LOC100287175 HAGHL LOC101929280 MIR662 WDR24 METRN JMJD8 NARFL FAM173A RPUSD1 MCRIP2 METTL26 GNG13 MSLN WFIKKN1 FBXL16 RHOT2 CCDC78 STUB1 CHTF18 LOC105371184 PIGQ
nsv1160325 Chr.16:506925 - 836376 on Build GRCh38 Duplication MIR3176 LOC105371038 RAB40C RHBDL1 WDR90 LOC100287175 HAGHL LOC101929280 MIR662 LINC00235 WDR24 METRN JMJD8 NARFL FAM173A RPUSD1 MCRIP2 PRR35 PRR25 METTL26 GNG13 NHLRC4 MSLN WFIKKN1 FBXL16 RHOT2 CCDC78 LOC107987233 STUB1 CHTF18 MIR5587 CAPN15 RAB11FIP3 LOC105371184 PIGQ

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More Information


Set Membership:

 Intragenic Intronic Non-exonic DGV Variation

Gene Ontology Categories:

Function(s) Process(es)


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