Hs03954108_cn

• Gene Symbol: CCDC154
• Assay Reference Genome Location: Chr.16:1444213 on build GRCh38
• Cytoband: 16p13.3

Target Gene Details

• Entrez Gene ID: 645811
• Gene Name: coiled-coil domain containing 154
• Gene Aliases: C16orf29
• Location: Chr.16:1434388-1444489 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
CCDC154	NM_001143980.1			NP_001137452.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv571161	Chr.16:1431019 - 1457987 on Build GRCh38	Gain	CCDC154 CLCN7 LOC105371045
esv2762143	Chr.16:1270592 - 1519404 on Build GRCh38	Gain	CCDC154 GNPTG UNKL CLCN7 C16orf91 IFT140 PTX4 BAIAP3 TSR3 UBE2I TELO2 LOC105371045
nsv471068	Chr.16:1439259 - 1460566 on Build GRCh38	Gain	CCDC154 CLCN7
esv2422427	Chr.16:10001 - 2723164 on Build GRCh38	Duplication	FAM234A SNORA64 MPG LOC105371047 TPSB2 PDPK1 MIR662 PRSS27 SPSB3 NTN3 RAB40C LOC107984876 CCNF MIR940 GFER LOC105371184 MEIOB FLJ42627 MIR1225 TBC1D24 HBQ1 NOXO1 PKD1 HAGH LOC101929280 DNASE1L2 SLC9A3R2 C1QTNF8 METRN NPW SSTR5 MIR6767 CCDC78 PTX4 ECI1 WDR24 AMDHD2 LOC100287175 HBA2 CLCN7 IFT140 MIR6859-4 TMEM204 GNG13 KCTD5 METTL26 RPUSD1 NARFL HS3ST6 TRAF7 PRR35 MRPL28 MIR3178 MSRB1 RPL3L SNRNP25 MRPS34 LOC652276 BAIAP3 E4F1 LOC106660606 IGFALS ABCA3 HBZ SNORA10 LINC00254 HBA1 CEMP1 LOC729652 TPSAB1 TMEM8A LOC105371045 MIR3176 LMF1 GNPTG NUBP2 MIR4516 WDR90 LMF1-AS1 PDIA2 CASKIN1 JMJD8 TPSD1 NDUFB10 RHOT2 POLR3K NPRL3 RGS11 HBM RPS2 WFIKKN1 C16orf59 SSTR5-AS1 MLST8 LOC105371046 LOC107987233 SNHG19 NTHL1 LOC100134368 FBXL16 TELO2 FAM173A MCRIP2 RHBDF1 LOC105371038 MIR5587 PRR25 ARHGDIG MIR6768 PIGQ CRAMP1 MSLN RNF151 MIR4717 TSR3 CCDC154 RAB11FIP3 HN1L ERVK13-1 RAB26 MIR3177 BRICD5 CACNA1H ZNF598 DDX11L10 EME2 TBL3 LOC105371049 WASIR2 UNKL RHBDL1 AXIN1 RNPS1 MIR6511B1 LINC00235 MIR3677 SNORA78 TPSG1 ABCA17P C16orf91 LUC7L CAPN15 HAGHL SNORD60 UBE2I PRSS29P SYNGR3 SNHG9 FAHD1 CHTF18 ATP6V0C MAPK8IP3 STUB1 NME4 NHLRC4 NME3 PGP RPL23AP5 TSC2 MIR3180-5 DECR2 SOX8
nsv471066	Chr.16:893361 - 1482836 on Build GRCh38	Loss	PRSS29P UNKL TPSB2 C1QTNF8 SSTR5 LOC107984876 TPSAB1 TSR3 LOC105371045 SSTR5-AS1 CCDC154 LMF1 GNPTG CLCN7 TPSG1 LMF1-AS1 C16orf91 SOX8 CACNA1H TPSD1 BAIAP3 UBE2I
nsv952899	Chr.16:1142501 - 1535899 on Build GRCh38	Deletion	PRSS29P UNKL LOC105371047 TPSB2 PTX4 TPSAB1 TSR3 LOC105371045 CCDC154 GNPTG CLCN7 TPSG1 C16orf91 IFT140 TMEM204 CACNA1H TPSD1 BAIAP3 UBE2I TELO2
nsv817713	Chr.16:1426464 - 1460566 on Build GRCh38	Loss	CCDC154 CLCN7 LOC105371045
nsv819844	Chr.16:1401518 - 1457987 on Build GRCh38	Gain	CCDC154 UNKL CLCN7 C16orf91 LOC105371045

More Information

Additional Information:

For this assay, SNP(s) [rs79854713] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

• Set Membership: Intragenic, Intronic, Non-exonic, DGV Variation