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See other TAF1C CNV Assays ›
Gene Symbol
TAF1C
Assay Reference Genome
Location

Chr.16:84185962 on build GRCh38
Cytoband
16q24.1
Assay ID Hs03954314_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 9013

Gene Name:

 TATA-box binding protein associated factor, RNA polymerase I subunit C

Gene Aliases:

 MGC:39976, SL1, TAFI110, TAFI95

Location:

 Chr.16:84177847-84187070 on Build GRCh38

Assay Gene Location:

 Within Intron 1
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
TAF1C NM_001243156.1 NP_001230085.1
NM_001243157.1 NP_001230086.1
NM_001243158.1 NP_001230087.1
NM_001243159.1 NP_001230088.1
NM_001243160.1 NP_001230089.1
NM_005679.3 NP_005670.3
NM_139353.2 NP_647610.2
XM_005256226.3 XP_005256283.1
XM_005256227.3 XP_005256284.1
XM_006721325.3 XP_006721388.1
XM_006721326.3 XP_006721389.1
XM_017023845.1 XP_016879334.1
XM_017023846.1 XP_016879335.1
XM_017023847.1 XP_016879336.1
AB209594.1 BAD92831.1
AK097031.1
AK299060.1
AK299347.1
AK304261.1
AK304739.1
AK315982.1
AU130229.1
BC028131.1 AAH28131.1
DC376588.1
DC377529.1
L39059.1 AAA62861.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
esv3639413 Chr.16:84172318 - 84253359 on Build GRCh38 Loss ADAD2 KCNG4 DNAAF1 TAF1C
nsv833309 Chr.16:84076867 - 84248591 on Build GRCh38 Loss ADAD2 KCNG4 DNAAF1 HSDL1 TAF1C MBTPS1 LOC729887
nsv1065790 Chr.16:83830329 - 84243597 on Build GRCh38 Loss NECAB2 ADAD2 KCNG4 LOC105371371 DNAAF1 HSDL1 SLC38A8 TAF1C MBTPS1 LOC729887 OSGIN1 MLYCD
esv2761930 Chr.16:84007420 - 84312461 on Build GRCh38 Gain ADAD2 KCNG4 DNAAF1 HSDL1 SLC38A8 TAF1C LOC105376777 MBTPS1 LOC729887 WFDC1
nsv523437 Chr.16:84176132 - 84196770 on Build GRCh38 Loss ADAD2 DNAAF1 TAF1C
nsv573423 Chr.16:84179104 - 84190716 on Build GRCh38 Loss TAF1C
esv3639414 Chr.16:84176251 - 84352273 on Build GRCh38 Loss ADAD2 KCNG4 DNAAF1 TAF1C LOC105376777 WFDC1
nsv457597 Chr.16:84182086 - 84215151 on Build GRCh38 Loss ADAD2 TAF1C
esv3639412 Chr.16:84170074 - 84221406 on Build GRCh38 Loss ADAD2 KCNG4 DNAAF1 TAF1C
nsv483044 Chr.16:84166395 - 87066394 on Build GRCh38 Gain FOXF1 LOC146513 KCNG4 LOC105376777 LINC01081 LOC440390 MTHFSD GSE1 MIR1910 FENDRR CRISPLD2 KIAA0513 LINC00311 FLJ30679 KLHL36 DNAAF1 TLDC1 C16orf74 TAF1C ATP2C2 FOXC2-AS1 LOC105371374 MIR6774 WFDC1 LOC101928474 COX4I1 GINS2 LOC101928557 ADAD2 LOC400548 LOC101928614 MIR5093 LINC00917 ZDHHC7 USP10 COTL1 IRF8 FOXL1 LOC102724344 EMC8 FOXC2 LINC01082 FAM92B
nsv1059227 Chr.16:84029323 - 84233403 on Build GRCh38 Loss ADAD2 KCNG4 DNAAF1 HSDL1 SLC38A8 TAF1C MBTPS1 LOC729887

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More Information


Additional Information:

For this assay, SNP(s) [rs142823387] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

Set Membership:

 Intragenic Intronic Non-exonic DGV Variation

Panther Classification:

Molecular Function -

DNA-directed RNA polymerase

Gene Ontology Categories:

Function(s) Process(es)


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