Hs03958562_cn

• Gene Symbol: NCBP3
• Assay Reference Genome Location: Chr.17:3827425 on build GRCh38
• Cytoband: 17p13.2

Target Gene Details

• Entrez Gene ID: 55421
• Gene Name: nuclear cap binding subunit 3
• Gene Aliases: C17orf85, ELG, HSA277841
• Location: Chr.17:3806748-3846251 on Build GRCh38
• Assay Gene Location: Within Intron 5

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
NCBP3	NM_001114118.2			NP_001107590.1
	XM_005256717.2			XP_005256774.1
	XM_006721556.2			XP_006721619.1
	XM_011523954.2			XP_011522256.1
	XM_011523955.2			XP_011522257.1
	XM_017024826.1			XP_016880315.1
	AK125048.1
	DA403386.1
	DA815746.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv520428	Chr.17:3822605 - 3835696 on Build GRCh38	Gain	NCBP3
nsv1065489	Chr.17:2631416 - 3948349 on Build GRCh38	Gain	PAFAH1B1 OR1A1 OR3A2 OR3A4P OR1D2 LOC105371592 P2RX1 OR1A2 CLUH TRPV3 GSG2 OR3A3 MIR1253 ATP2A3 NCBP3 OR1E2 LOC101927911 CTNS OR1D4 MIR6776 OR1G1 TAX1BP3 SPATA22 SHPK OR1E1 ASPA P2RX5 LOC105371591 EMC6 OR1D5 CAMKK1 RAP1GAP2 P2RX5-TAX1BP3 OR3A1 ITGAE TRPV1 CCDC92B
nsv833343	Chr.17:3822173 - 3980223 on Build GRCh38	Loss	CAMKK1 NCBP3 P2RX1 ATP2A3
esv2761940	Chr.17:3767589 - 3997617 on Build GRCh38	Gain	CAMKK1 NCBP3 ITGAE P2RX1 ATP2A3
nsv469791	Chr.17:3700760 - 3885899 on Build GRCh38	Loss	CAMKK1 NCBP3 ITGAE GSG2
nsv1055740	Chr.17:3381841 - 3890153 on Build GRCh38	Gain	SHPK OR1E1 ASPA P2RX5 OR3A2 TRPV3 GSG2 EMC6 OR3A3 CAMKK1 P2RX5-TAX1BP3 NCBP3 OR1E2 CTNS ITGAE TAX1BP3 TRPV1 SPATA22

More Information

• Set Membership: Intragenic, Intronic, Non-exonic, DGV Variation

Gene Ontology Categories:

Process(es)

7-methylguanosine mRNA capping
mRNA transport
defense response to virus

Function(s)

nucleotide binding
RNA 7-methylguanosine cap binding
mRNA binding
protein binding
poly(A) RNA binding