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Gene Symbol
OGFOD3
Assay Reference Genome
Location

Chr.17:82389205 on build GRCh38
Cytoband
17q25.3
Assay ID Hs03962964_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 79701

Gene Name:

 2-oxoglutarate and iron dependent oxygenase domain containing 3

Gene Aliases:

 C17orf101

Location:

 Chr.17:82389210-82418637 on Build GRCh38

Assay Gene Location:

 Overlaps - Exon 10
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
OGFOD3 NM_024648.2 NP_078924.1
NM_175902.4 NP_787098.3
NR_033265.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv1059334 Chr.17:82277007 - 82411683 on Build GRCh38 Gain SECTM1 LOC101929511 UTS2R TEX19 OGFOD3 CD7 LOC105376790
nsv833573 Chr.17:82275053 - 82406183 on Build GRCh38 Loss SECTM1 LOC101929511 UTS2R TEX19 OGFOD3 CD7 LOC105376790
esv2760445 Chr.17:82267669 - 82421456 on Build GRCh38 Gain CSNK1D SECTM1 LOC101929511 UTS2R TEX19 OGFOD3 CD7 LOC105376790 HEXDC
nsv428351 Chr.17:81152631 - 83064073 on Build GRCh38 Gain GPS1 TMEM105 FOXK2 LOC100130370 PCYT2 WDR45B CEP131 B3GNTL1 C17orf62 SLC16A3 SLC38A10 LOC105371925 MAFG-AS1 LOC101929552 ANAPC11 ASPSCR1 NPB SLC25A10 MIR6786 RAB40B TBCD SECTM1 MIR6787 NOTUM MIR3186 LOC105371944 TSPAN10 AATK-AS1 LRRC45 NARF UTS2R TEX19 OGFOD3 HEXDC LOC105376791 ACTG1 ALYREF FN3KRP DCXR TEPSIN LOC101929511 P4HB STRA13 FASN BAHCC1 DUS1L LINC00482 GCGR LOC105376790 RAC3 MIR4525 SIRT7 MRPL12 ZNF750 MCRIP1 CD7 HGS MIR4740 PDE6G ARL16 MAFG OXLD1 CSNK1D MYADML2 C17orf89 PYCR1 FN3K ARHGDIA AATK NPLOC4 CCDC57 PPP1R27 FSCN2 FAAP100 RFNG SNORD134 CCDC137
esv3641423 Chr.17:82369046 - 82398572 on Build GRCh38 Gain UTS2R OGFOD3 LOC105376790
nsv1067160 Chr.17:82381853 - 82446450 on Build GRCh38 Loss C17orf62 OGFOD3 LOC105376790 HEXDC
nsv469561 Chr.17:82251148 - 82472274 on Build GRCh38 Loss CSNK1D NARF SECTM1 LOC101929511 C17orf62 UTS2R TEX19 OGFOD3 CD7 LOC105376790 HEXDC
nsv952394 Chr.17:82297625 - 82408424 on Build GRCh38 Deletion SECTM1 UTS2R TEX19 OGFOD3 CD7 LOC105376790
nsv1067194 Chr.17:82294731 - 82653129 on Build GRCh38 Gain FOXK2 NARF SECTM1 WDR45B C17orf62 UTS2R TEX19 OGFOD3 CD7 LOC105376790 HEXDC
esv2762577 Chr.17:82244836 - 82838431 on Build GRCh38 Gain+Loss FOXK2 CSNK1D NARF FN3K WDR45B C17orf62 UTS2R TEX19 OGFOD3 LOC105376790 HEXDC MIR4525 LOC101929552 LOC105376791 FN3KRP RAB40B TBCD SECTM1 LOC101929511 ZNF750 CD7
esv21913 Chr.17:81828123 - 83103548 on Build GRCh38 Gain+Loss GPS1 FOXK2 PCYT2 WDR45B B3GNTL1 C17orf62 SLC16A3 MAFG-AS1 LOC101929552 ANAPC11 ASPSCR1 NPB RAB40B TBCD SECTM1 MIR6787 NOTUM LOC105371944 LRRC45 NARF UTS2R TEX19 OGFOD3 HEXDC LOC105376791 ALYREF FN3KRP DCXR LOC101929511 P4HB STRA13 FASN DUS1L LOC105376790 METRNL RAC3 MIR4525 SIRT7 ZNF750 MCRIP1 CD7 MAFG CSNK1D MYADML2 PYCR1 FN3K ARHGDIA CCDC57 PPP1R27 RFNG SNORD134

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More Information


Additional Information:

For this assay, SNP(s) [rs74001662] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

Set Membership:

 Intragenic Non-exonic DGV Variation

Panther Classification:

Molecular Function -

protein modifying enzyme

Gene Ontology Categories:

Function(s) Process(es)


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