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See other LOC102725180 CNV Assays ›
Gene Symbol
LOC102725180
Assay Reference Genome
Location

Chr.19:1172140 on build GRCh38
Cytoband
19p13.3
Assay ID Hs04011415_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 102725180

Gene Name:

 collagen alpha-1(VII) chain-like

Gene Aliases:

 -

Location:

 Chr.19:1168696-1174735 on Build GRCh38

Assay Gene Location:

 Within Intron 1
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
LOC102725180 XM_017027551.1 XP_016883040.1

Target Gene Details

Entrez Gene ID:

 22904

Gene Name:

 strawberry notch homolog 2

Gene Aliases:

 KIAA0963, SNO, STNO

Location:

 Chr.19:1107634-1174283 on Build GRCh38

Assay Gene Location:

 Within Intron 1
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
SBNO2 NM_014963.2 NP_055778.2
XM_011527804.2 XP_011526106.1
AB023180.1
AK292407.1
AK300981.1
DC400108.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv1056200 Chr.19:1107036 - 1193347 on Build GRCh38 Gain LOC102725180 SBNO2
nsv1058677 Chr.19:1054061 - 1283189 on Build GRCh38 Loss CBARP ATP5D C19orf24 ABCA7 STK11 POLR2E ARHGAP45 EFNA2 GPX4 CIRBP LOC102725180 MIDN CIRBP-AS1 SBNO2
dgv136n111 Chr.19:1038223 - 1329640 on Build GRCh38 Deletion CBARP ATP5D CNN2 C19orf24 ABCA7 STK11 POLR2E ARHGAP45 EFNA2 GPX4 CIRBP LOC102725180 MIDN CIRBP-AS1 SBNO2
nsv9662 Chr.19:893394 - 1317740 on Build GRCh38 Gain CBARP RNU6-9 ATP5D GRIN3B ARID3A CNN2 LOC105372235 KISS1R C19orf24 ABCA7 STK11 RNU6-2 POLR2E R3HDM4 ARHGAP45 EFNA2 GPX4 CIRBP TMEM259 LOC102725180 MIDN CIRBP-AS1 WDR18 SBNO2
nsv470104 Chr.19:1170446 - 1325151 on Build GRCh38 Loss STK11 CBARP ATP5D EFNA2 CIRBP LOC102725180 MIDN CIRBP-AS1 C19orf24 SBNO2
nsv1160555 Chr.19:887275 - 1346084 on Build GRCh38 Deletion GRIN3B CNN2 LOC105372235 C19orf24 ARHGAP45 GPX4 LOC102725180 MIDN CIRBP-AS1 WDR18 CBARP RNU6-9 ATP5D ARID3A KISS1R ABCA7 STK11 RNU6-2 POLR2E R3HDM4 EFNA2 MED16 CIRBP TMEM259 SBNO2
nsv470103 Chr.19:1086044 - 1325151 on Build GRCh38 Gain CBARP ATP5D C19orf24 STK11 POLR2E ARHGAP45 EFNA2 GPX4 CIRBP LOC102725180 MIDN CIRBP-AS1 SBNO2
esv2758743 Chr.19:951641 - 1544934 on Build GRCh38 Gain+Loss NDUFS7 GRIN3B DAZAP1 CNN2 LOC105372235 C19orf24 RPS15 GAMT PLK5 ARHGAP45 GPX4 LOC102725180 MIDN APC2 CIRBP-AS1 WDR18 ADAMTSL5 CBARP ATP5D ARID3A PCSK4 ABCA7 STK11 REEP6 RNU6-2 MUM1 C19orf25 POLR2E EFNA2 CIRBP TMEM259 SBNO2
nsv953939 Chr.19:1104902 - 1174301 on Build GRCh38 Deletion GPX4 LOC102725180 SBNO2

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