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See other ARID3A CNV Assays ›
Gene Symbol
ARID3A
Assay Reference Genome
Location

Chr.19:934467 on build GRCh38
Cytoband
19p13.3
Assay ID Hs04014283_cn
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Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 1820

Gene Name:

 AT-rich interaction domain 3A

Gene Aliases:

 BRIGHT, DRIL1, DRIL3, E2FBP1

Location:

 Chr.19:925733-975934 on Build GRCh38

Assay Gene Location:

 Within Intron 6
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
ARID3A NM_005224.2 NP_005215.1
XM_005259513.4 XP_005259570.1
XM_005259514.4 XP_005259571.1
XM_017026445.1 XP_016881934.1
XM_017026446.1 XP_016881935.1
XM_017026447.1 XP_016881936.1
AY152547.1 AAN74028.1
AY845638.1 AAW30734.1
BC033163.1 AAH33163.1
BC060828.1 AAH60828.1
U88047.1 AAC32888.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv9662 Chr.19:893394 - 1317740 on Build GRCh38 Gain LOC105372235 RNU6-9 LOC102725180 CIRBP-AS1 RNU6-2 ARHGAP45 CIRBP STK11 MIDN EFNA2 GPX4 ARID3A KISS1R C19orf24 R3HDM4 TMEM259 ATP5D CNN2 CBARP ABCA7 WDR18 GRIN3B SBNO2 POLR2E
nsv1160555 Chr.19:887275 - 1346084 on Build GRCh38 Deletion LOC105372235 LOC102725180 CIRBP-AS1 RNU6-2 ARHGAP45 MED16 CIRBP STK11 MIDN EFNA2 KISS1R TMEM259 CNN2 ABCA7 WDR18 GRIN3B RNU6-9 GPX4 ARID3A C19orf24 R3HDM4 ATP5D CBARP SBNO2 POLR2E
dgv134n111 Chr.19:607984 - 967584 on Build GRCh38 Deletion RNF126 PRTN3 RNU6-9 AZU1 LOC101928450 MIR3187 PRSS57 MED16 POLRMT PALM ELANE MISP MIR4745 ARID3A PLPPR3 KISS1R CFD R3HDM4 FSTL3 FGF22 PTBP1 HCN2
nsv578188 Chr.19:923744 - 1059005 on Build GRCh38 Loss LOC105372235 TMEM259 CNN2 ABCA7 RNU6-2 WDR18 GRIN3B ARID3A
nsv953938 Chr.19:355801 - 1104501 on Build GRCh38 Deletion LOC105372235 AZU1 MIR3187 PRSS57 RNU6-2 ARHGAP45 MED16 ELANE MISP PLPPR3 KISS1R FSTL3 TMEM259 CNN2 ABCA7 WDR18 FGF22 GRIN3B RNF126 PRTN3 RNU6-9 LOC101928450 MADCAM1 CDC34 TPGS1 POLRMT PALM ODF3L2 BSG MIR4745 GPX4 ARID3A CFD R3HDM4 PTBP1 C2CD4C SHC2 HCN2 THEG POLR2E GZMM
nsv470101 Chr.19:401714 - 1008505 on Build GRCh38 Loss LOC105372235 AZU1 MIR3187 PRSS57 MED16 ELANE MISP PLPPR3 KISS1R FSTL3 WDR18 FGF22 GRIN3B RNF126 PRTN3 RNU6-9 LOC101928450 MADCAM1 CDC34 TPGS1 POLRMT PALM ODF3L2 BSG MIR4745 ARID3A CFD R3HDM4 PTBP1 C2CD4C SHC2 HCN2 GZMM

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More Information


Additional Information:

For this assay, SNP(s) [rs75046450,rs78135700] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

Set Membership:

 Intragenic Intronic Non-exonic DGV Variation

Panther Classification:

Gene Ontology Categories:

Function(s) Process(es)


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