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See other TPGS1 CNV Assays ›
Gene Symbol
TPGS1
Assay Reference Genome
Location

Chr.19:509059 on build GRCh38
Cytoband
19p13.3
Assay ID Hs04014992_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 91978

Gene Name:

 tubulin polyglutamylase complex subunit 1

Gene Aliases:

 C19orf20, GTRGEO22, PGs1

Location:

 Chr.19:507497-519654 on Build GRCh38

Assay Gene Location:

 Within Intron 1
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
TPGS1 NM_033513.2 NP_277048.2
AK125401.1 1 1560
AK126170.1 BAC86469.1
BC009520.1 AAH09520.1
BM846833.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv516566 Chr.19:495722 - 525739 on Build GRCh38 Gain MADCAM1 TPGS1
esv3574264 Chr.19:490245 - 516350 on Build GRCh38 Gain MADCAM1 ODF3L2 TPGS1
nsv509712 Chr.19:391096 - 558643 on Build GRCh38 Insertion MADCAM1 GZMM CDC34 ODF3L2 TPGS1 C2CD4C SHC2
dgv6155n54 Chr.19:404077 - 519032 on Build GRCh38 Loss MADCAM1 ODF3L2 TPGS1 C2CD4C SHC2
nsv428360 Chr.19:232069 - 702131 on Build GRCh38 Gain POLRMT FGF22 HCN2 LOC101929060 MADCAM1 GZMM PLPP2 CDC34 PRSS57 RNF126 BSG ODF3L2 TPGS1 FSTL3 C2CD4C SHC2 THEG MIER2
dgv6166n54 Chr.19:507731 - 520131 on Build GRCh38 Gain TPGS1
dgv1013e212 Chr.19:416231 - 521269 on Build GRCh38 Gain MADCAM1 ODF3L2 TPGS1 SHC2
esv33417 Chr.19:474104 - 518906 on Build GRCh38 Gain+Loss MADCAM1 ODF3L2 TPGS1
nsv577978 Chr.19:294526 - 782854 on Build GRCh38 Gain MISP POLRMT FGF22 HCN2 LOC101929060 MADCAM1 GZMM CDC34 PRSS57 RNF126 BSG ODF3L2 TPGS1 FSTL3 C2CD4C SHC2 THEG PALM LOC101928450 MIER2
nsv953938 Chr.19:355801 - 1104501 on Build GRCh38 Deletion MISP RNU6-2 R3HDM4 GZMM MED16 TMEM259 CDC34 RNF126 ODF3L2 ARHGAP45 TPGS1 C2CD4C SHC2 THEG GPX4 GRIN3B KISS1R LOC101928450 RNU6-9 PRTN3 POLRMT FGF22 POLR2E HCN2 MIR3187 WDR18 MADCAM1 PTBP1 PLPPR3 PRSS57 ARID3A BSG ABCA7 FSTL3 AZU1 CNN2 CFD PALM LOC105372235 MIR4745 ELANE
nsv470101 Chr.19:401714 - 1008505 on Build GRCh38 Loss MISP R3HDM4 GZMM MED16 CDC34 RNF126 ODF3L2 TPGS1 C2CD4C SHC2 GRIN3B KISS1R LOC101928450 RNU6-9 PRTN3 POLRMT FGF22 HCN2 MIR3187 WDR18 MADCAM1 PTBP1 PLPPR3 PRSS57 ARID3A BSG FSTL3 AZU1 CFD PALM LOC105372235 MIR4745 ELANE
esv28250 Chr.19:470703 - 521323 on Build GRCh38 Gain+Loss MADCAM1 ODF3L2 TPGS1

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More Information


Additional Information:

For this assay, SNP(s) [rs73505442] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

Set Membership:

 Intragenic Intronic Non-exonic DGV Variation

Panther Classification:

Gene Ontology Categories:

Function(s) Process(es)


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