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See other LOC102725180 CNV Assays ›
Gene Symbol
LOC102725180
Assay Reference Genome
Location

Chr.19:1168703 on build GRCh38
Cytoband
19p13.3
Assay ID Hs04018096_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 102725180

Gene Name:

 collagen alpha-1(VII) chain-like

Gene Aliases:

 -

Location:

 Chr.19:1168696-1174735 on Build GRCh38

Assay Gene Location:

 Overlaps - Exon 1
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
LOC102725180 XM_017027551.1 XP_016883040.1

Target Gene Details

Entrez Gene ID:

 22904

Gene Name:

 strawberry notch homolog 2

Gene Aliases:

 KIAA0963, SNO, STNO

Location:

 Chr.19:1107634-1174283 on Build GRCh38

Assay Gene Location:

 Within Intron 1
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
SBNO2 NM_014963.2 NP_055778.2
XM_011527804.2 XP_011526106.1
AB023180.1
AK292407.1
AK300981.1
DC400108.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv1056200 Chr.19:1107036 - 1193347 on Build GRCh38 Gain LOC102725180 SBNO2
nsv1058677 Chr.19:1054061 - 1283189 on Build GRCh38 Loss GPX4 CIRBP-AS1 MIDN STK11 ABCA7 POLR2E LOC102725180 ARHGAP45 CBARP CIRBP C19orf24 ATP5D EFNA2 SBNO2
dgv136n111 Chr.19:1038223 - 1329640 on Build GRCh38 Deletion GPX4 CIRBP-AS1 CNN2 MIDN STK11 ABCA7 POLR2E LOC102725180 ARHGAP45 CBARP CIRBP C19orf24 ATP5D EFNA2 SBNO2
nsv9662 Chr.19:893394 - 1317740 on Build GRCh38 Gain RNU6-2 GPX4 CIRBP-AS1 CNN2 TMEM259 MIDN STK11 GRIN3B KISS1R R3HDM4 ABCA7 POLR2E RNU6-9 LOC102725180 WDR18 ARHGAP45 CBARP CIRBP LOC105372235 C19orf24 ATP5D ARID3A EFNA2 SBNO2
nsv1160555 Chr.19:887275 - 1346084 on Build GRCh38 Deletion RNU6-2 GPX4 CIRBP-AS1 MIDN KISS1R RNU6-9 LOC102725180 ATP5D ARID3A EFNA2 SBNO2 CNN2 TMEM259 STK11 GRIN3B R3HDM4 ABCA7 POLR2E WDR18 ARHGAP45 CBARP CIRBP MED16 LOC105372235 C19orf24
nsv578241 Chr.19:1137402 - 1170446 on Build GRCh38 Gain LOC102725180 SBNO2
nsv470103 Chr.19:1086044 - 1325151 on Build GRCh38 Gain GPX4 CIRBP-AS1 MIDN STK11 POLR2E LOC102725180 ARHGAP45 CBARP CIRBP C19orf24 ATP5D EFNA2 SBNO2
esv2758743 Chr.19:951641 - 1544934 on Build GRCh38 Gain+Loss RNU6-2 MUM1 GPX4 CIRBP-AS1 MIDN ADAMTSL5 PCSK4 LOC102725180 GAMT ATP5D ARID3A DAZAP1 EFNA2 SBNO2 C19orf25 APC2 CNN2 TMEM259 STK11 GRIN3B ABCA7 POLR2E WDR18 ARHGAP45 CBARP CIRBP LOC105372235 C19orf24 NDUFS7 REEP6 RPS15 PLK5
nsv953939 Chr.19:1104902 - 1174301 on Build GRCh38 Deletion GPX4 LOC102725180 SBNO2

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