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See other LOC102725180 CNV Assays ›
Gene Symbol
LOC102725180
Assay Reference Genome
Location

Chr.19:1170349 on build GRCh38
Cytoband
19p13.3
Assay ID Hs04027070_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 102725180

Gene Name:

 collagen alpha-1(VII) chain-like

Gene Aliases:

 -

Location:

 Chr.19:1168696-1174735 on Build GRCh38

Assay Gene Location:

 Within Intron 1
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
LOC102725180 XM_017027551.1 XP_016883040.1

Target Gene Details

Entrez Gene ID:

 22904

Gene Name:

 strawberry notch homolog 2

Gene Aliases:

 KIAA0963, SNO, STNO

Location:

 Chr.19:1107634-1174283 on Build GRCh38

Assay Gene Location:

 Within Intron 1
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
SBNO2 NM_014963.2 NP_055778.2
XM_011527804.2 XP_011526106.1
AB023180.1
AK292407.1
AK300981.1
DC400108.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv1056200 Chr.19:1107036 - 1193347 on Build GRCh38 Gain LOC102725180 SBNO2
nsv1058677 Chr.19:1054061 - 1283189 on Build GRCh38 Loss LOC102725180 SBNO2 POLR2E CIRBP GPX4 MIDN EFNA2 ATP5D C19orf24 ARHGAP45 CBARP CIRBP-AS1 ABCA7 STK11
dgv136n111 Chr.19:1038223 - 1329640 on Build GRCh38 Deletion LOC102725180 SBNO2 POLR2E CIRBP GPX4 MIDN EFNA2 ATP5D C19orf24 ARHGAP45 CBARP CIRBP-AS1 ABCA7 STK11 CNN2
nsv9662 Chr.19:893394 - 1317740 on Build GRCh38 Gain LOC102725180 SBNO2 RNU6-9 POLR2E CIRBP GPX4 MIDN EFNA2 RNU6-2 ARID3A ATP5D R3HDM4 WDR18 KISS1R GRIN3B C19orf24 ARHGAP45 CBARP CIRBP-AS1 ABCA7 STK11 LOC105372235 CNN2 TMEM259
nsv1160555 Chr.19:887275 - 1346084 on Build GRCh38 Deletion RNU6-9 POLR2E GPX4 MED16 MIDN EFNA2 ATP5D C19orf24 ARHGAP45 CIRBP-AS1 LOC105372235 CNN2 TMEM259 LOC102725180 SBNO2 CIRBP RNU6-2 ARID3A R3HDM4 WDR18 KISS1R GRIN3B CBARP ABCA7 STK11
nsv578241 Chr.19:1137402 - 1170446 on Build GRCh38 Gain LOC102725180 SBNO2
nsv470103 Chr.19:1086044 - 1325151 on Build GRCh38 Gain LOC102725180 SBNO2 POLR2E CIRBP GPX4 MIDN EFNA2 ATP5D C19orf24 ARHGAP45 CBARP CIRBP-AS1 STK11
esv2758743 Chr.19:951641 - 1544934 on Build GRCh38 Gain+Loss PLK5 GAMT POLR2E C19orf25 GPX4 MIDN EFNA2 ATP5D REEP6 C19orf24 ADAMTSL5 ARHGAP45 CIRBP-AS1 MUM1 APC2 LOC105372235 CNN2 TMEM259 LOC102725180 SBNO2 CIRBP RNU6-2 ARID3A WDR18 DAZAP1 PCSK4 NDUFS7 RPS15 GRIN3B CBARP ABCA7 STK11
nsv953939 Chr.19:1104902 - 1174301 on Build GRCh38 Deletion LOC102725180 SBNO2 GPX4

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