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See other ATF5 CNV Assays ›
Gene Symbol
ATF5
Assay Reference Genome
Location

Chr.19:49930360 on build GRCh38
Cytoband
19q13.33
Assay ID Hs04030879_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 22809

Gene Name:

 activating transcription factor 5

Gene Aliases:

 ATFX, HMFN0395

Location:

 Chr.19:49928702-49933936 on Build GRCh38

Assay Gene Location:

 Within Exon 4
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
ATF5 NM_001193646.1 NP_001180575.1
NM_001290746.1 1 157 NP_001277675.1
NM_012068.5 NP_036200.2
XM_011526629.2 XP_011524931.1
AB021663.2 BAA78477.2
AB073613.1 BAD38650.1
AK024402.1
AK091985.1
AK290592.1
BC005174.2 AAH05174.1
BF528888.1
BM462249.1
BP378116.1
BU187153.1
DA251296.1
DA684664.1
HY011917.1 1 117

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv9739 Chr.19:47901840 - 50143063 on Build GRCh38 Gain+Loss IRF3 ALDH16A1 PTOV1 SNAR-C4 EMP3 TEAD2 SNAR-A3 SNORD33 CGB3 CCDC155 CCDC114 PIH1D1 MAMSTR PRRG2 RPL13A PRMT1 MIR4324 SNAR-A11 PNKP RCN3 SNAR-A1 NUCB1 LOC105447645 PPFIA3 MIR6800 SNAR-A14 ZNF114 NOSIP BCL2L12 CARD8 SNAR-A5 SCAF1 SNAR-B2 KDELR1 GRWD1 TBC1D17 FTL CARD8-AS1 SNAR-C2 MIR6798 FGF21 SNORD35A AP2A1 C19orf73 PLEKHA4 NTF4 HRC LHB SNAR-A10 GRIN2D SNAR-A2 CABP5 RUVBL2 LOC100287477 SNAR-B1 SEC1P PRR12 SNAR-A13 MIR6799 CYTH2 AKT1S1 SNAR-C5 FAM83E TRPM4 KCNJ14 SNORD32A PTH2 CGB1 SLC17A7 SNRNP70 SNAR-A4 IZUMO1 TULP2 NUCB1-AS1 MIR4749 MIR4751 SPHK2 GYS1 C19orf68 LIN7B FUT2 DBP MIR5088 LOC105372430 PTOV1-AS2 SNAR-C1 FUT1 MED25 RPL18 PTOV1-AS1 SLC6A16 RPS11 SNAR-A7 LIG1 LMTK3 TSKS CPT1C PLA2G4C CGB8 SNAR-G2 LOC101059948 ADM5 PPP1R15A SNAR-D MIR4750 FCGRT SYNGR4 CGB5 FLT3LG SNORD34 LOC101928295 KCNA7 SNAR-A12 GFY DKKL1 BCAT2 MIR150 RASIP1 ELSPBP1 SULT2B1 CD37 FUZ CGB2 SIGLEC11 PLA2G4C-AS1 SPACA4 SNAR-G1 HSD17B14 BSPH1 SNORD35B FLJ26850 SNAR-A6 VRK3 NUP62 CA11 SNAR-C3 ZNF473 BAX DHDH SNAR-A8 ATF5 IL4I1 TMEM143 SNAR-A9 CGB7 RRAS NTN5 SIGLEC16
nsv1065648 Chr.19:49924738 - 50001154 on Build GRCh38 Gain SIGLEC11 VRK3 ATF5 IL4I1 NUP62 MIR4751 SIGLEC16
dgv53n68 Chr.19:49724393 - 49943224 on Build GRCh38 Loss MIR6800 PTOV1 NUP62 PTOV1-AS2 MIR4750 FUZ TBC1D17 MED25 PTOV1-AS1 ATF5 IL4I1 TSKS MIR6799 MIR4749 MIR4751 AKT1S1 AP2A1 PNKP
nsv953600 Chr.19:49555044 - 49938043 on Build GRCh38 Deletion IRF3 PTOV1 MIR5088 PTOV1-AS2 FUZ MED25 PTOV1-AS1 TSKS PRRG2 PRR12 PRMT1 MIR6799 CPT1C AKT1S1 PNKP MIR6800 NOSIP NUP62 BCL2L12 ADM5 SCAF1 MIR4750 TBC1D17 ATF5 IL4I1 RRAS MIR4749 MIR4751 AP2A1
nsv579910 Chr.19:49915478 - 49957657 on Build GRCh38 Gain SIGLEC11 ATF5 IL4I1 NUP62 MIR4751
esv3644630 Chr.19:49877826 - 50039767 on Build GRCh38 Gain SIGLEC11 VRK3 ATF5 IL4I1 NUP62 MIR4751 AKT1S1 MIR4750 ZNF473 SIGLEC16 TBC1D17
dgv54n68 Chr.19:49848512 - 50008788 on Build GRCh38 Loss VRK3 PTOV1 NUP62 PTOV1-AS2 MIR4750 TBC1D17 SIGLEC11 PTOV1-AS1 ATF5 IL4I1 MIR4749 MIR4751 AKT1S1 SIGLEC16 PNKP
nsv1058623 Chr.19:49918762 - 49966847 on Build GRCh38 Gain SIGLEC11 ATF5 IL4I1 NUP62 MIR4751

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