Hs04042569_cn

• Gene Symbol: YTHDF1
• Assay Reference Genome Location: Chr.20:63199692 on build GRCh38
• Cytoband: 20q13.33

Target Gene Details

• Entrez Gene ID: 54915
• Gene Name: YTH N6-methyladenosine RNA binding protein 1
• Gene Aliases: C20orf21
• Location: Chr.20:63195429-63216186 on Build GRCh38
• Assay Gene Location: Within Intron 4

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
YTHDF1	NM_017798.3			NP_060268.2
	AB055518.1			BAB62751.1
	AK000398.1			BAA91138.1
	AK095795.1
	AK300073.1
	AL834366.1			CAD39029.1
	BC003681.1			AAH03681.1
	BC016920.2			AAH16920.2
	BC025264.1			AAH25264.1
	BC050284.1			AAH50284.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
dgv519n27	Chr.20:63154307 - 63248817 on Build GRCh38	Loss	MIR3196 MIR124-3 BIRC7 NKAIN4 YTHDF1 LOC107985425
nsv953306	Chr.20:63151949 - 63571247 on Build GRCh38	Deletion	EEF1A2 KCNQ2 LOC100130152 MIR124-3 CHRNA4 HELZ2 PTK6 PPDPF LOC100130587 YTHDF1 FNDC11 LOC107985425 SRMS MIR3196 COL20A1 BIRC7 MIR4326 NKAIN4 FLJ16779 ARFGAP1 LOC102723788
dgv68n68	Chr.20:63076461 - 63224595 on Build GRCh38	Loss	MIR124-3 LOC63930 HAR1B HAR1A YTHDF1
nsv586559	Chr.20:63195172 - 63248817 on Build GRCh38	Gain	MIR3196 BIRC7 NKAIN4 YTHDF1 LOC107985425
nsv828798	Chr.20:63194266 - 63202129 on Build GRCh38	Loss	YTHDF1
nsv9825	Chr.20:62775470 - 63601330 on Build GRCh38	Gain	BHLHE23 EEF1A2 LINC01056 CHRNA4 HELZ2 MRGBP PTK6 LOC63930 LOC107985425 GMEB2 TCFL5 COL20A1 BIRC7 DIDO1 LOC107985428 FLJ16779 OGFR-AS1 LINC00659 KCNQ2 LOC100130152 MIR124-3 HAR1B PPDPF LINC00029 LOC100130587 YTHDF1 FNDC11 SRMS COL9A3 MIR3196 GID8 OGFR SLC17A9 MIR4326 HAR1A NKAIN4 DPH3P1 ARFGAP1 LOC102723788
nsv834031	Chr.20:63132252 - 63245925 on Build GRCh38	Loss	MIR3196 MIR124-3 BIRC7 NKAIN4 YTHDF1 LOC107985425

More Information

Additional Information:

For this assay, SNP(s) [rs115086768] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

• Set Membership: Intragenic, Intronic, Non-exonic, DGV Variation

Gene Ontology Categories:

Process(es)

positive regulation of translational initiation

Function(s)

ribosome binding
poly(A) RNA binding
N6-methyladenosine-containing RNA binding