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See other RTEL1-TNFRSF6B CNV Assays ›
Gene Symbol
RTEL1-TNFRSF6B
Assay Reference Genome
Location

Chr.20:63697858 on build GRCh38
Cytoband
20q13.33
Assay ID Hs04051088_cn
Size
Availability Made To Order
Catalog # 4400291
Price
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Assay Details

Target Gene Details

Entrez Gene ID:

 100533107

Gene Name:

 RTEL1-TNFRSF6B readthrough (NMD candidate)

Gene Aliases:

 -

Location:

 Chr.20:63657810-63698698 on Build GRCh38

Assay Gene Location:

 Within Intron 37
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
RTEL1-TNFRSF6B NR_037882.1

Target Gene Details

Entrez Gene ID:

 8771

Gene Name:

 TNF receptor superfamily member 6b

Gene Aliases:

 DCR3, DJ583P15.1.1, M68, M68E, TR6

Location:

 Chr.20:63696651-63698698 on Build GRCh38

Assay Gene Location:

 Within Intron 2
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
TNFRSF6B NM_003823.3 NP_003814.1
AF104419.1 AAD03056.1
AF134240.1 AAD29688.1
AF217794.1 AAF33686.1
AW204999.1
AY124378.1 AAM94172.1
AY124379.1 AAM94173.1
AY358279.1 AAQ88646.1
BC017065.1 AAH17065.1
BC034349.1 AAH34349.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
dgv7676n54 Chr.20:63686867 - 63702868 on Build GRCh38 Loss TNFRSF6B RTEL1 RTEL1-TNFRSF6B ARFRP1
nsv953308 Chr.20:63650148 - 63831847 on Build GRCh38 Deletion TNFRSF6B ZBTB46 RTEL1 STMN3 ZBTB46-AS1 RTEL1-TNFRSF6B LIME1 ZGPAT SLC2A4RG ARFRP1
nsv1160690 Chr.20:63639552 - 63744287 on Build GRCh38 Deletion TNFRSF6B ZBTB46 RTEL1 STMN3 RTEL1-TNFRSF6B LIME1 ZGPAT SLC2A4RG ARFRP1
nsv428381 Chr.20:63583375 - 64334167 on Build GRCh38 Gain+Loss PRPF6 ZBTB46 RTEL1 UCKL1-AS1 OPRL1 LKAAEAR1 MIR941-4 DNAJC5 SLC2A4RG MIR941-1 MIR1914 RGS19 NPBWR2 MIR941-3 ABHD16B MIR6813 MIR941-2 MIR941-5 LOC100505771 MIR647 STMN3 TPD52L2 GMEB2 SOX18 ZBTB46-AS1 RTEL1-TNFRSF6B LIME1 ZGPAT TCEA2 UCKL1 SAMD10 PCMTD2 MYT1 C20orf181 TNFRSF6B LINC00176 LINC00266-1 ZNF512B ARFRP1
nsv586611 Chr.20:63680946 - 63709340 on Build GRCh38 Loss TNFRSF6B RTEL1 RTEL1-TNFRSF6B ZGPAT ARFRP1
nsv470563 Chr.20:63486715 - 63793308 on Build GRCh38 Loss LOC100505771 ZBTB46 RTEL1 STMN3 PTK6 HELZ2 GMEB2 SRMS PPDPF RTEL1-TNFRSF6B LIME1 ZGPAT SLC2A4RG EEF1A2 TNFRSF6B FNDC11 ARFRP1
esv2758806 Chr.20:63470996 - 63745014 on Build GRCh38 Gain+Loss LOC100505771 ZBTB46 RTEL1 STMN3 PTK6 HELZ2 GMEB2 SRMS PPDPF RTEL1-TNFRSF6B LIME1 ZGPAT SLC2A4RG EEF1A2 TNFRSF6B KCNQ2 FNDC11 ARFRP1

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More Information


Additional Information:

For this assay, SNP(s) [rs74748720] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

Set Membership:

 Intragenic Intronic Non-exonic DGV Variation

Panther Classification:

Molecular Function -

transmembrane signal receptor

Gene Ontology Categories:

Function(s) Process(es)


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