Hs04074640_cn

• Gene Symbol: SPATC1L
• Assay Reference Genome Location: Chr.21:46179644 on build GRCh38
• Cytoband: 21q22.3

Target Gene Details

• Entrez Gene ID: 84221
• Gene Name: spermatogenesis and centriole associated 1-like
• Gene Aliases: C21orf56
• Location: Chr.21:46161148-46185159 on Build GRCh38
• Assay Gene Location: Within Intron 2

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
SPATC1L	NM_001142854.1			NP_001136326.1
	NM_032261.4			NP_115637.3
	XM_005261188.4			XP_005261245.1
	XM_017028480.1			XP_016883969.1
	AK304535.1
	AK309847.1
	AL136871.1			CAB66805.1
	BC084577.1			AAH84577.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv519904	Chr.21:46163592 - 46461396 on Build GRCh38	Loss	SPATC1L YBEY PCNT DIP2A MCM3AP-AS1 MCM3AP C21orf58 LSS
nsv1061087	Chr.21:46056174 - 46223305 on Build GRCh38	Loss	COL6A2 SPATC1L FTCD LSS
dgv7923n54	Chr.21:46169399 - 46183988 on Build GRCh38	Loss	SPATC1L
nsv509804	Chr.21:45879599 - 46235140 on Build GRCh38	Insertion	COL6A2 SPATC1L PCBP3 FTCD LOC101928796 MCM3AP-AS1 MCM3AP LSS COL6A1
nsv3545	Chr.21:46168351 - 46180400 on Build GRCh38	Insertion	SPATC1L
nsv587954	Chr.21:46162188 - 46183551 on Build GRCh38	Loss	SPATC1L
nsv470910	Chr.21:45933861 - 46665076 on Build GRCh38	Gain	PCBP3 DIP2A LOC101928796 MCM3AP DIP2A-IT1 C21orf58 LSS COL6A1 COL6A2 SPATC1L YBEY FTCD PCNT PRMT2 MCM3AP-AS1 S100B
esv3647163	Chr.21:46176351 - 46181304 on Build GRCh38	Loss	SPATC1L
nsv1060978	Chr.21:46068159 - 46413726 on Build GRCh38	Gain	COL6A2 SPATC1L YBEY FTCD PCNT MCM3AP-AS1 MCM3AP C21orf58 LSS

More Information

• Set Membership: Intragenic, Intronic, Non-exonic, DGV Variation

Gene Ontology Categories:

Process(es)

biological_process

Function(s)

molecular_function
protein binding