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Gene Symbol
CROCC
Assay Reference Genome
Location

Chr.1:16942759 on build GRCh38
Cytoband
1p36.13
Assay ID Hs04206917_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 9696

Gene Name:

 ciliary rootlet coiled-coil, rootletin

Gene Aliases:

 ROLT

Location:

 Chr.1:16914082-16972979 on Build GRCh38

Assay Gene Location:

 Within Intron 15
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
CROCC NM_014675.4 NP_055490.4
XM_006711058.3 XP_006711121.1
XM_011542468.1 XP_011540770.1
XM_011542470.2 XP_011540772.1
XM_017002913.1 XP_016858402.1
XM_017002914.1 XP_016858403.1
XM_017002915.1 XP_016858404.1
AB007914.2 BAA32290.2
AK026910.1
BC126911.1
BC126912.1
DQ139275.1 ABA43896.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
dgv78n100 Chr.1:16660344 - 16949734 on Build GRCh38 Loss FAM231A RNU1-4 ESPNP MST1L MIR3675 CROCC RNU1-2 LOC105376805 LOC102723383 RNU1-3
nsv428421 Chr.1:16437838 - 17157486 on Build GRCh38 Gain+Loss LOC105376796 SPATA21 ATP13A2 SDHB FAM231B CROCCP3 PADI2 CROCC CROCCP2 RNU1-1 NECAP2 MST1P2 LOC100132147 FAM231A RNU1-4 ESPNP MST1L MIR3675 RNU1-2 NBPF1 MFAP2 LOC105376805 LOC102723383 RNU1-3
dgv55n100 Chr.1:16544771 - 16949734 on Build GRCh38 Gain+Loss CROCC CROCCP2 MST1P2 FAM231A RNU1-4 ESPNP MST1L MIR3675 RNU1-2 NBPF1 LOC105376805 LOC102723383 RNU1-3
nsv1006828 Chr.1:16850538 - 16949734 on Build GRCh38 Gain+Loss MIR3675 CROCC RNU1-2 LOC105376805
dgv116n100 Chr.1:16876990 - 16949734 on Build GRCh38 Gain+Loss CROCC RNU1-2 LOC105376805
nsv508947 Chr.1:16909817 - 17011115 on Build GRCh38 Insertion ATP13A2 CROCC MFAP2
nsv1002613 Chr.1:16915859 - 16949734 on Build GRCh38 Loss CROCC
dgv86n100 Chr.1:16679227 - 16956580 on Build GRCh38 Gain RNU1-4 ESPNP MST1L MIR3675 CROCC RNU1-2 LOC105376805 LOC102723383
dgv92n100 Chr.1:16684943 - 17003642 on Build GRCh38 Gain ATP13A2 RNU1-4 ESPNP MST1L MIR3675 CROCC RNU1-2 MFAP2 LOC105376805 LOC102723383
dgv101n100 Chr.1:16756084 - 16959812 on Build GRCh38 Gain MST1L MIR3675 CROCC RNU1-2 LOC105376805
dgv24n67 Chr.1:16896197 - 16946140 on Build GRCh38 Gain CROCC
nsv1139475 Chr.1:16856205 - 16949205 on Build GRCh38 Duplication MIR3675 CROCC RNU1-2 LOC105376805
nsv829625 Chr.1:16505385 - 16955258 on Build GRCh38 Gain LOC105376796 FAM231B CROCC CROCCP2 RNU1-1 MST1P2 LOC100132147 FAM231A RNU1-4 ESPNP MST1L MIR3675 RNU1-2 NBPF1 LOC105376805 LOC102723383 RNU1-3
nsv834280 Chr.1:16888218 - 17123006 on Build GRCh38 Loss ATP13A2 SDHB PADI2 CROCC RNU1-2 MFAP2 LOC105376805
dgv118n100 Chr.1:16886207 - 16949734 on Build GRCh38 Gain CROCC RNU1-2 LOC105376805
nsv1151399 Chr.1:16849404 - 16949205 on Build GRCh38 Duplication MIR3675 CROCC RNU1-2 LOC105376805
dgv14e214 Chr.1:16936619 - 16947018 on Build GRCh38 Gain CROCC
nsv834269 Chr.1:16855283 - 17038531 on Build GRCh38 Loss ATP13A2 SDHB MIR3675 CROCC RNU1-2 MFAP2 LOC105376805
nsv471438 Chr.1:16928200 - 16954743 on Build GRCh38 Gain CROCC
nsv1002599 Chr.1:16912960 - 16968705 on Build GRCh38 Gain CROCC
dgv166n54 Chr.1:16856620 - 16955930 on Build GRCh38 Gain+Loss MIR3675 CROCC RNU1-2 LOC105376805
dgv127n100 Chr.1:16930810 - 16965387 on Build GRCh38 Loss CROCC
nsv482201 Chr.1:16921950 - 16972979 on Build GRCh38 Gain CROCC
nsv834258 Chr.1:16850864 - 16954454 on Build GRCh38 Loss MIR3675 CROCC RNU1-2 LOC105376805
dgv54e59 Chr.1:16856670 - 16949868 on Build GRCh38 Duplication MIR3675 CROCC RNU1-2 LOC105376805
nsv945800 Chr.1:16849164 - 16955509 on Build GRCh38 Duplication MIR3675 CROCC RNU1-2 LOC105376805
dgv63n100 Chr.1:16583102 - 16956580 on Build GRCh38 Gain CROCC CROCCP2 MST1P2 FAM231A RNU1-4 ESPNP MST1L MIR3675 RNU1-2 NBPF1 LOC105376805 LOC102723383 RNU1-3
esv3577752 Chr.1:16539300 - 16959771 on Build GRCh38 Loss FAM231B CROCC CROCCP2 MST1P2 FAM231A RNU1-4 ESPNP MST1L MIR3675 RNU1-2 NBPF1 LOC105376805 LOC102723383 RNU1-3
esv3892525 Chr.1:16913478 - 16955930 on Build GRCh38 Loss CROCC
nsv9324 Chr.1:16470652 - 16954729 on Build GRCh38 Gain+Loss LOC105376796 FAM231B CROCCP3 CROCC CROCCP2 RNU1-1 MST1P2 LOC100132147 FAM231A RNU1-4 ESPNP MST1L MIR3675 RNU1-2 NBPF1 LOC105376805 LOC102723383 RNU1-3
dgv39n100 Chr.1:16451184 - 16965387 on Build GRCh38 Gain LOC105376796 FAM231B CROCCP3 CROCC CROCCP2 RNU1-1 NECAP2 MST1P2 LOC100132147 FAM231A RNU1-4 ESPNP MST1L MIR3675 RNU1-2 NBPF1 LOC105376805 LOC102723383 RNU1-3
esv33965 Chr.1:16685625 - 16953480 on Build GRCh38 Gain+Loss RNU1-4 ESPNP MST1L MIR3675 CROCC RNU1-2 LOC105376805 LOC102723383
nsv1128591 Chr.1:16895905 - 16949205 on Build GRCh38 Duplication CROCC RNU1-2
dgv23n67 Chr.1:16881082 - 16946112 on Build GRCh38 Gain CROCC RNU1-2 LOC105376805
dgv120n100 Chr.1:16890896 - 16997938 on Build GRCh38 Gain ATP13A2 CROCC RNU1-2 MFAP2
nsv1160181 Chr.1:16864367 - 16949746 on Build GRCh38 Duplication CROCC RNU1-2 LOC105376805
esv26111 Chr.1:16849227 - 16955258 on Build GRCh38 Gain+Loss MIR3675 CROCC RNU1-2 LOC105376805
dgv111n100 Chr.1:16864355 - 16968705 on Build GRCh38 Gain CROCC RNU1-2 LOC105376805

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More Information


Additional Information:

For this assay, SNP(s) [rs113486959] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

Set Membership:

 Intragenic Intronic Non-exonic DGV Variation

Panther Classification:

Gene Ontology Categories:

Function(s) Process(es)


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