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See other HLA-DPA1 CNV Assays ›
Gene Symbol
HLA-DPA1
Assay Reference Genome
Location

Chr.6:33078440 on build GRCh38
Cytoband
6p21.32
Assay ID Hs04312873_cn
Size
Availability Made To Order
Catalog # 4400291
Price 4,505.00
Your Price
Online offer:
4505.0
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Assay Details

Target Gene Details

Entrez Gene ID:

 3113

Gene Name:

 major histocompatibility complex, class II, DP alpha 1

Gene Aliases:

 DP(W3), DP(W4), HLA-DP1A, HLADP, HLASB, PLT1

Location:

 Chr.6:33064569-33080778 on Build GRCh38

Assay Gene Location:

 Within Intron 1
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
HLA-DPA1 NM_001242524.1 NP_001229453.1
NM_001242525.1 NP_001229454.1
BI553587.1
CD516536.1

Target Gene Details

Entrez Gene ID:

 3115

Gene Name:

 major histocompatibility complex, class II, DP beta 1

Gene Aliases:

 DPB1, HLA-DP, HLA-DP1B, HLA-DPB

Location:

 Chr.6:33075926-33089696 on Build GRCh38

Assay Gene Location:

 Within Intron 1
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
HLA-DPB1 NM_002121.5 NP_002112.3
AB208978.1 BAD92215.1
AK291986.1
AK301322.1
AK303153.1
AK313305.1
AY656678.1 AAV71025.1
AY656679.1 AAV71026.1
AY656680.1 AAV71027.1
AY804132.1 AAW78737.1
AY804133.1 AAW78738.1
AY804134.1 AAW78739.1
AY804135.1 AAW78740.1
AY804136.1 AAW78741.1
AY804137.1 AAW78742.1
AY804138.1 AAW78743.1
AY804139.1 AAW78744.1
AY804140.1 AAW78745.1
AY804141.1 AAW78746.1
AY804142.1 AAW78747.1
AY804143.1 AAW78748.1
AY831401.1 AAW80919.1
AY831402.1 AAW80920.1
AY831403.1 AAW80921.1
AY831404.1 AAW80922.1
BC007963.2 AAH07963.1
BC013184.1 AAH13184.1
BC015000.1 AAH15000.1
BP213121.1
BT019780.1 AAV38583.1
DQ284441.1 ABC66207.1
FR775797.1
GQ891549.1
HE603611.1
HE603612.1
HE614584.1
HE614585.1
HE614586.1
HE614587.1
HE614588.1
HE614589.1
HE614590.1
HE614591.1
J03041.1 AAA35993.1
KJ780721.1
M28200.1 AAA53195.1
M28202.1 AAA53197.1
M57466.1 AAA63221.1
M83664.1 AAA59837.1
X01426.1 CAA25672.1
X03067.1 CAA26871.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv823645 Chr.6:33061191 - 33091364 on Build GRCh38 Loss HLA-DPA1 HLA-DPB1
nsv1024429 Chr.6:32997190 - 33154554 on Build GRCh38 Loss HLA-DPA1 HCG24 HLA-DPB2 HLA-DPB1 HLA-DOA
esv2731879 Chr.6:33065144 - 33107309 on Build GRCh38 Deletion HLA-DPA1 HLA-DPB1
esv1006913 Chr.6:33064893 - 33088398 on Build GRCh38 Gain HLA-DPA1 HLA-DPB1
nsv1073969 Chr.6:31456422 - 33480523 on Build GRCh38 Deletion C6orf25 MIR6834 LY6G6C TAP2 LOC100294145 LST1 MIR6832 ATP6V1G2-DDX39B WDR46 RPS18 BAG6 HLA-DQB1 LY6G6E MCCD1 SLC44A4 CSNK2B MSH5-SAPCD1 HLA-DQA1 TNXA LOC102725068 HSD17B8 MSH5 RGL2 DDX39B-AS1 HLA-DQB1-AS1 MIR1236 EHMT2 HLA-DPB2 PSMB8-AS1 APOM C4B PBX2 C2 HSPA1B LY6G5B C6orf48 MIR6721 ATP6V1G2 CFB LTB SNORD117 CYP21A1P NCR3 CYP21A2 TNXB SYNGAP1 PSMB9 HLA-DRA HLA-DOA AGPAT1 LOC101929163 HLA-DQB2 SKIV2L SAPCD1-AS1 BRD2 GPSM3 SNORA38 HLA-DMB LY6G6F HCG25 HSPA1L LTA ATF6B CLIC1 VWA7 HLA-DRB5 KIFC1 ZBTB22 ZBTB9 PPP1R2P1 PFDN6 HLA-DRB1 STK19 C4A RNF5 HLA-DPA1 HLA-DOB TAP1 PRRT1 HSPA1A SNORD48 MIR6833 VPS52 NFKBIL1 MIR5004 DDX39B SNORD84 NELFE TNF HLA-DRB6 NEU1 LY6G5C PPT2 SLC39A7 MICB SAPCD1 TAPBP HLA-DQA2 C2-AS1 HLA-DPB1 LY6G6D C6orf47 LSM2 EGFL8 FKBPL SNORD52 PRRC2A HCG24 HCG23 HCG26 C6orf10 ABHD16A AIF1 PPT2-EGFL8 PHF1 HLA-DMA HCP5 NOTCH4 CUTA LOC100507547 DDAH2 RXRB BTNL2 PSMB8 AGER B3GALT4 LOC100287329 ZBTB12 DAXX RING1 MIR6873 MIR219A1 GPANK1 MIR4646 COL11A2 VARS MIR3135B DXO
nsv1112900 Chr.6:31455323 - 33480423 on Build GRCh38 Deletion C6orf25 MIR6834 LY6G6C TAP2 LOC100294145 LST1 MIR6832 ATP6V1G2-DDX39B WDR46 RPS18 BAG6 HLA-DQB1 LY6G6E MCCD1 SLC44A4 CSNK2B MSH5-SAPCD1 HLA-DQA1 TNXA LOC102725068 HSD17B8 MSH5 RGL2 DDX39B-AS1 HLA-DQB1-AS1 MIR1236 EHMT2 HLA-DPB2 PSMB8-AS1 APOM C4B PBX2 C2 HSPA1B LY6G5B C6orf48 MIR6721 ATP6V1G2 CFB LTB SNORD117 CYP21A1P NCR3 CYP21A2 TNXB SYNGAP1 PSMB9 HLA-DRA HLA-DOA AGPAT1 LOC101929163 HLA-DQB2 SKIV2L SAPCD1-AS1 BRD2 GPSM3 SNORA38 HLA-DMB LY6G6F HCG25 HSPA1L LTA ATF6B CLIC1 VWA7 HLA-DRB5 KIFC1 ZBTB22 ZBTB9 PPP1R2P1 PFDN6 HLA-DRB1 STK19 C4A RNF5 HLA-DPA1 HLA-DOB TAP1 PRRT1 HSPA1A SNORD48 MIR6833 VPS52 NFKBIL1 MIR5004 DDX39B SNORD84 NELFE TNF HLA-DRB6 NEU1 LY6G5C PPT2 SLC39A7 MICB SAPCD1 TAPBP HLA-DQA2 C2-AS1 HLA-DPB1 LY6G6D C6orf47 LSM2 EGFL8 FKBPL SNORD52 PRRC2A HCG24 HCG23 HCG26 C6orf10 ABHD16A AIF1 PPT2-EGFL8 PHF1 HLA-DMA HCP5 NOTCH4 CUTA LOC100507547 DDAH2 RXRB BTNL2 PSMB8 AGER B3GALT4 LOC100287329 ZBTB12 DAXX RING1 MIR6873 MIR219A1 GPANK1 MIR4646 COL11A2 VARS MIR3135B DXO
esv22467 Chr.6:33055021 - 33087568 on Build GRCh38 Loss HLA-DPA1 HLA-DPB1
nsv602818 Chr.6:32998165 - 33150041 on Build GRCh38 Loss HLA-DPA1 HCG24 HLA-DPB2 HLA-DPB1 HLA-DOA
nsv1119076 Chr.6:32595823 - 33480623 on Build GRCh38 Deletion HCG25 HLA-DQB1-AS1 MIR6834 TAP2 HLA-DPB2 PSMB8-AS1 LOC100294145 SLC39A7 KIFC1 ZBTB22 WDR46 TAPBP RPS18 ZBTB9 HLA-DQA2 HLA-DPB1 PPP1R2P1 PFDN6 HLA-DQB1 HLA-DPA1 HCG24 SYNGAP1 HLA-DOB PSMB9 HLA-DOA TAP1 PHF1 HLA-DMA CUTA HLA-DQB2 RXRB PSMB8 B3GALT4 BRD2 HLA-DQA1 VPS52 HSD17B8 MIR5004 DAXX RING1 MIR6873 MIR219A1 HLA-DMB COL11A2 RGL2 MIR3135B

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