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See other AGER CNV Assays ›
Gene Symbol
AGER
Assay Reference Genome
Location

Chr.6:32181628 on build GRCh38
Cytoband
6p21.32
Assay ID Hs04323829_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 177

Gene Name:

 advanced glycosylation end product-specific receptor

Gene Aliases:

 RAGE, SCARJ1

Location:

 Chr.6:32180968-32185247 on Build GRCh38

Assay Gene Location:

 Overlaps Intron 7 - Exon 8
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
AGER NM_001136.4 NP_001127.1
NM_001206929.1 NP_001193858.1
NM_001206932.1 NP_001193861.1
NM_001206934.1 NP_001193863.1
NM_001206936.1 NP_001193865.1
NM_001206940.1 NP_001193869.1
NM_001206954.1 NP_001193883.1
NM_001206966.1 NP_001193895.1
NM_172197.2 NP_751947.1
NR_038190.1
XM_017010328.1 XP_016865817.1
AB036432.1 BAA89369.1
AB061668.1 BAC65465.1
AB061669.1 BAC65466.1
AF536236.1 AAQ10685.1
AF536237.1 AAQ10686.1
AF537303.1 AAQ10782.1
AJ133822.1 CAB43108.1
AK298100.1
AK313178.1
AY755619.1 AAX07272.1
AY755620.1 AAX07273.1
AY755621.1 AAX07274.1
AY755622.1 AAX07275.1
AY755623.1 AAX07276.1
AY755624.1 AAX07277.1
AY755625.1 AAX07278.1
AY755626.1 AAX07279.1
AY755627.1 AAX07280.1
AY755628.1 AAX07281.1
BC020669.1 AAH20669.1
BM971899.1
DQ104251.1
DQ104252.1
DQ104253.1
DQ104254.1
EU117141.1
EU428811.1
EU428812.1
EU428813.1
EU428814.1
EU428815.1
EU428816.1
FJ545655.1
GU139370.1
GU139371.1
GU139372.1
GU139373.1
GU139374.1
GU139375.1
GU139376.1
GU139377.1
GU139378.1
GU139379.1
GU139380.1
GU139381.1
GU139382.1
GU139383.1
GU139384.1
HQ148133.1
HQ148134.1
HQ148135.1
KC692917.1
M91211.1 AAA03574.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv830629 Chr.6:32076201 - 32222010 on Build GRCh38 Loss PBX2 NOTCH4 MIR6721 PPT2 LOC100507547 PRRT1 AGER MIR6833 PPT2-EGFL8 FKBPL RNF5 GPSM3 AGPAT1 EGFL8 ATF6B TNXB
dgv10472n54 Chr.6:31985690 - 32812026 on Build GRCh38 Loss MIR6721 MIR3135B CYP21A2 PRRT1 PPT2-EGFL8 FKBPL RNF5 CYP21A1P C4A BTNL2 C6orf10 PBX2 NOTCH4 HLA-DRB1 PPT2 HLA-DQB1-AS1 LOC100507547 HLA-DQA2 HLA-DQB2 AGER HCG23 MIR6833 C4B HLA-DRB6 HLA-DQA1 LOC101929163 GPSM3 TNXA AGPAT1 HLA-DQB1 EGFL8 HLA-DRB5 HLA-DRA ATF6B TNXB
dgv10463n54 Chr.6:31817661 - 32683279 on Build GRCh38 Loss MIR6721 CYP21A2 C6orf48 PRRT1 FKBPL CYP21A1P EHMT2 SNORD52 C6orf10 MIR1236 HSPA1A AGER HCG23 MIR6833 C4B ZBTB12 HLA-DRB6 GPSM3 AGPAT1 HLA-DQB1 ATF6B SKIV2L C2-AS1 DXO CFB PPT2-EGFL8 RNF5 C4A STK19 BTNL2 SNORD48 SLC44A4 PBX2 NOTCH4 NELFE HSPA1B HLA-DRB1 PPT2 C2 HLA-DQB1-AS1 LOC100507547 NEU1 HLA-DQA1 LOC101929163 TNXA EGFL8 HLA-DRB5 HLA-DRA TNXB
esv2759415 Chr.6:31903735 - 32241336 on Build GRCh38 Gain+Loss MIR6721 CYP21A2 C2-AS1 DXO PRRT1 CFB PPT2-EGFL8 FKBPL RNF5 CYP21A1P C4A STK19 MIR1236 PBX2 NOTCH4 NELFE PPT2 C2 LOC100507547 AGER MIR6833 C4B GPSM3 TNXA AGPAT1 EGFL8 ATF6B TNXB SKIV2L
nsv1126749 Chr.6:31457323 - 32594423 on Build GRCh38 Deletion VWA7 MIR6721 APOM CYP21A2 DDX39B C6orf48 TNF HCG26 PRRT1 MICB LY6G6C FKBPL CYP21A1P EHMT2 SNORD52 AIF1 LTB VARS C6orf10 MIR4646 MIR1236 SNORA38 MCCD1 HSPA1A LY6G5B HCP5 LY6G6D LOC100287329 AGER HCG23 MIR6833 C6orf47 C4B ZBTB12 MSH5 HLA-DRB6 LOC102725068 GPSM3 AGPAT1 NFKBIL1 NCR3 ATF6B LTA MIR6832 SAPCD1 SKIV2L GPANK1 CSNK2B C6orf25 C2-AS1 PRRC2A DXO SAPCD1-AS1 CFB PPT2-EGFL8 LY6G6E DDX39B-AS1 RNF5 C4A BAG6 STK19 BTNL2 SNORD48 CLIC1 SLC44A4 PBX2 NOTCH4 NELFE SNORD84 HSPA1B HLA-DRB1 PPT2 C2 LY6G6F LOC100507547 HSPA1L LSM2 NEU1 ABHD16A ATP6V1G2-DDX39B LOC101929163 MSH5-SAPCD1 TNXA SNORD117 ATP6V1G2 LY6G5C EGFL8 HLA-DRB5 HLA-DRA DDAH2 LST1 TNXB
nsv1073969 Chr.6:31456422 - 33480523 on Build GRCh38 Deletion VWA7 CYP21A2 DDX39B TNF HCG26 RGL2 MICB FKBPL EHMT2 SNORD52 BRD2 LTB C6orf10 COL11A2 MIR4646 SNORA38 HLA-DMB MCCD1 HSPA1A LOC100287329 AGER C6orf47 C4B TAP1 PSMB8-AS1 HSD17B8 HLA-DOB GPSM3 PFDN6 RING1 NCR3 ATF6B LTA SKIV2L HCG24 MIR3135B MIR6834 CSNK2B C6orf25 DXO SAPCD1-AS1 PPP1R2P1 LY6G6E BAG6 BTNL2 CLIC1 PBX2 ZBTB22 NELFE SNORD84 HSPA1B HLA-DRB1 LY6G6F HLA-DQB1-AS1 LOC100507547 HSPA1L LSM2 NEU1 HLA-DQB2 LOC100294145 PSMB8 HLA-DPB2 ABHD16A TAPBP B3GALT4 HLA-DQA1 MSH5-SAPCD1 LY6G5C HLA-DRB5 MIR6721 APOM MIR6873 TAP2 C6orf48 PRRT1 RPS18 LY6G6C CYP21A1P HLA-DPB1 AIF1 PSMB9 VARS MIR1236 HLA-DOA LY6G5B HCP5 RXRB LY6G6D KIFC1 HLA-DQA2 HCG23 MIR6833 HLA-DPA1 HCG25 ZBTB12 MSH5 HLA-DRB6 LOC102725068 SLC39A7 ZBTB9 AGPAT1 HLA-DQB1 NFKBIL1 PHF1 MIR6832 SAPCD1 GPANK1 MIR5004 VPS52 C2-AS1 DAXX PRRC2A CFB PPT2-EGFL8 DDX39B-AS1 CUTA RNF5 C4A STK19 SNORD48 SLC44A4 NOTCH4 PPT2 C2 WDR46 ATP6V1G2-DDX39B MIR219A1 LOC101929163 SYNGAP1 TNXA SNORD117 ATP6V1G2 EGFL8 HLA-DMA HLA-DRA DDAH2 LST1 TNXB
nsv602104 Chr.6:32096949 - 32203906 on Build GRCh38 Loss PBX2 NOTCH4 MIR6721 PPT2 LOC100507547 PRRT1 AGER MIR6833 PPT2-EGFL8 FKBPL RNF5 GPSM3 AGPAT1 EGFL8 ATF6B TNXB
nsv1112900 Chr.6:31455323 - 33480423 on Build GRCh38 Deletion VWA7 CYP21A2 DDX39B TNF HCG26 RGL2 MICB FKBPL EHMT2 SNORD52 BRD2 LTB C6orf10 COL11A2 MIR4646 SNORA38 HLA-DMB MCCD1 HSPA1A LOC100287329 AGER C6orf47 C4B TAP1 PSMB8-AS1 HSD17B8 HLA-DOB GPSM3 PFDN6 RING1 NCR3 ATF6B LTA SKIV2L HCG24 MIR3135B MIR6834 CSNK2B C6orf25 DXO SAPCD1-AS1 PPP1R2P1 LY6G6E BAG6 BTNL2 CLIC1 PBX2 ZBTB22 NELFE SNORD84 HSPA1B HLA-DRB1 LY6G6F HLA-DQB1-AS1 LOC100507547 HSPA1L LSM2 NEU1 HLA-DQB2 LOC100294145 PSMB8 HLA-DPB2 ABHD16A TAPBP B3GALT4 HLA-DQA1 MSH5-SAPCD1 LY6G5C HLA-DRB5 MIR6721 APOM MIR6873 TAP2 C6orf48 PRRT1 RPS18 LY6G6C CYP21A1P HLA-DPB1 AIF1 PSMB9 VARS MIR1236 HLA-DOA LY6G5B HCP5 RXRB LY6G6D KIFC1 HLA-DQA2 HCG23 MIR6833 HLA-DPA1 HCG25 ZBTB12 MSH5 HLA-DRB6 LOC102725068 SLC39A7 ZBTB9 AGPAT1 HLA-DQB1 NFKBIL1 PHF1 MIR6832 SAPCD1 GPANK1 MIR5004 VPS52 C2-AS1 DAXX PRRC2A CFB PPT2-EGFL8 DDX39B-AS1 CUTA RNF5 C4A STK19 SNORD48 SLC44A4 NOTCH4 PPT2 C2 WDR46 ATP6V1G2-DDX39B MIR219A1 LOC101929163 SYNGAP1 TNXA SNORD117 ATP6V1G2 EGFL8 HLA-DMA HLA-DRA DDAH2 LST1 TNXB
dgv10404n54 Chr.6:31312550 - 32516591 on Build GRCh38 Loss VWA7 MIR6721 APOM CYP21A2 DDX39B C6orf48 TNF HCG26 PRRT1 MICB LY6G6C FKBPL CYP21A1P EHMT2 SNORD52 AIF1 LTB VARS HLA-B C6orf10 MIR4646 MIR1236 SNORA38 MCCD1 HSPA1A LY6G5B HCP5 MIR6891 LY6G6D LOC100287329 AGER HCG23 MIR6833 C6orf47 C4B ZBTB12 MSH5 LOC102725068 GPSM3 AGPAT1 NFKBIL1 NCR3 ATF6B LTA MIR6832 SAPCD1 SKIV2L GPANK1 CSNK2B C6orf25 C2-AS1 PRRC2A DXO SAPCD1-AS1 CFB PPT2-EGFL8 LY6G6E DDX39B-AS1 RNF5 C4A BAG6 STK19 BTNL2 SNORD48 CLIC1 SLC44A4 PBX2 NOTCH4 NELFE SNORD84 HSPA1B PPT2 C2 LY6G6F LOC100507547 HSPA1L MICA LSM2 NEU1 ABHD16A ATP6V1G2-DDX39B LOC101929163 MSH5-SAPCD1 TNXA SNORD117 ATP6V1G2 LY6G5C EGFL8 HLA-DRA DDAH2 LST1 TNXB

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More Information


Set Membership:

 Intragenic Non-exonic DGV Variation

Panther Classification:

Gene Ontology Categories:

Function(s) Process(es)


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