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See other ALKBH4 CNV Assays ›
Gene Symbol
ALKBH4
Assay Reference Genome
Location

Chr.7:102464015 on build GRCh38
Cytoband
7q22.1
Assay ID Hs04328504_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 54784

Gene Name:

 alkB homolog 4, lysine demethylase

Gene Aliases:

 ABH4

Location:

 Chr.7:102456220-102464874 on Build GRCh38

Assay Gene Location:

 Within Intron 1
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
ALKBH4 NM_017621.3 NP_060091.1
XM_005250464.2 XP_005250521.1
XM_005250465.2 XP_005250522.1
AK000020.1 BAA90888.1
AK026097.1 BAB15358.1
AK222689.1 BAD96409.1
BC002820.2 AAH02820.1
BC017096.1 AAH17096.1
BX353099.2

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv831083 Chr.7:102340560 - 102655422 on Build GRCh38 Loss SPDYE2 LOC102724229 ORAI2 PRKRIP1 MIR548O LOC100289561 ALKBH4 POLR2J2 POLR2J POLR2J3 UPK3BL LOC107983993 RASA4B MIR5090 RASA4 LOC100630923 LRWD1 SPDYE2B SPDYE6 MIR4467
nsv8192 Chr.7:102450605 - 102692752 on Build GRCh38 Gain SPDYE2 LOC102724229 ORAI2 ALKBH4 POLR2J2 POLR2J POLR2J3 UPK3BL LOC107983993 RASA4B MIR5090 RASA4 LRWD1 SPDYE2B MIR4467
dgv11540n54 Chr.7:102461896 - 102470443 on Build GRCh38 Loss MIR5090 LRWD1 ALKBH4
nsv428182 Chr.7:102257460 - 102735503 on Build GRCh38 Gain SPDYE2 LOC102724229 ORAI2 PRKRIP1 MIR548O SH2B2 CUX1 LOC100289561 FBXL13 ALKBH4 POLR2J2 POLR2J POLR2J3 MIR4285 UPK3BL LOC107983993 RASA4B MIR5090 RASA4 LOC100630923 LRWD1 SPDYE2B SPDYE6 MIR4467
dgv6538n100 Chr.7:102171110 - 103063688 on Build GRCh38 Gain SPDYE2 LOC102724229 PRKRIP1 MIR548O LOC100289561 POLR2J2 POLR2J POLR2J3 FAM185A MIR4285 UPK3BL LOC107983993 RASA4 LOC100630923 LRWD1 SPDYE2B SPDYE6 LRRC17 ORAI2 SH2B2 CUX1 FBXL13 ALKBH4 RASA4B MIR5090 NFE4 MIR4467
nsv607998 Chr.7:102385213 - 102473462 on Build GRCh38 Gain+Loss ORAI2 PRKRIP1 MIR5090 LOC100630923 MIR548O LRWD1 MIR4467 ALKBH4 POLR2J
nsv5879 Chr.7:102450321 - 102747356 on Build GRCh38 Deletion SPDYE2 LOC102724229 ORAI2 FBXL13 ALKBH4 POLR2J2 POLR2J POLR2J3 UPK3BL LOC107983993 RASA4B MIR5090 RASA4 LRWD1 SPDYE2B MIR4467
nsv607999 Chr.7:102451288 - 102473452 on Build GRCh38 Loss ORAI2 MIR5090 LRWD1 MIR4467 ALKBH4 POLR2J

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More Information


Additional Information:

For this assay, SNP(s) [rs67493080] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

Set Membership:

 Intragenic Intronic Non-exonic DGV Variation

Panther Classification:

Gene Ontology Categories:

Function(s) Process(es)


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