Hs04398344_cn

• Gene Symbol: OR52N4
• Assay Reference Genome Location: Chr.11:5738844 on build GRCh38
• Cytoband: 11p15.4

Target Gene Details

• Entrez Gene ID: 390072
• Gene Name: olfactory receptor family 52 subfamily N member 4 (gene/pseudogene)
• Gene Aliases: OR11-64
• Location: Chr.11:5722137-5755958 on Build GRCh38
• Assay Gene Location: Within Intron 3

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
OR52N4	XM_017017711.1			XP_016873200.1
	XM_017017712.1			XP_016873201.1
	XM_017017713.1			XP_016873202.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
esv2673417	Chr.11:5738465 - 5742912 on Build GRCh38	Deletion	OR52N4
nsv553277	Chr.11:5701718 - 5988845 on Build GRCh38	Gain	OR52N1 OR52L1 OR56A5 OR52N2 OR52E6 OR52E4 TRIM22 OR52N4 OR56A3 OR52E8 OR56B1 OR52N5
nsv1053414	Chr.11:5591759 - 6008982 on Build GRCh38	Gain	TRIM34 TRIM6 OR52N1 OR52L1 OR52N2 OR56A4 TRIM6-TRIM34 OR52E8 OR56B1 OR52N5 OR56A5 OR52E6 OR52E4 TRIM22 OR52N4 TRIM5 OR56A3
nsv1075273	Chr.11:5738569 - 5741139 on Build GRCh38	Deletion	OR52N4
esv2759801	Chr.11:5709147 - 5986383 on Build GRCh38	Gain+Loss	OR52N1 OR52L1 OR56A5 OR52N2 OR52E6 OR52E4 TRIM22 OR52N4 OR56A3 OR52E8 OR56B1 OR52N5
nsv553241	Chr.11:5484804 - 6182455 on Build GRCh38	Gain	TRIM34 OR52N1 OLFM5P OR56A4 TRIM6-TRIM34 OR52B2 OR56B4 OR56A5 OR52B1P OR52E4 OR52B5P OR52N4 TRIM5 OR56A3 OR51B5 OR56A1 TRIM6 OR52L1 OR52N2 OR52E8 OR52D1 OR56B1 OR52N5 OR52H1 OR52B6 OR52E6 UBQLNL TRIM22 UBQLN3
nsv553273	Chr.11:5618643 - 5850601 on Build GRCh38	Gain	TRIM34 OR52N1 OR52N2 OR52E6 TRIM6-TRIM34 TRIM22 OR52N4 TRIM5 OR56B1 OR52N5
esv2905	Chr.11:5738824 - 5741244 on Build GRCh38	Loss	OR52N4
dgv1608n54	Chr.11:5738230 - 5740096 on Build GRCh38	Loss	OR52N4
esv2347807	Chr.11:5738679 - 5741322 on Build GRCh38	Deletion	OR52N4
dgv196n67	Chr.11:5738809 - 5741311 on Build GRCh38	Loss	OR52N4
nsv820291	Chr.11:5738891 - 5747673 on Build GRCh38	Gain	OR52N4
nsv821206	Chr.11:5738853 - 5741311 on Build GRCh38	Deletion	OR52N4
nsv1046068	Chr.11:5314713 - 6042512 on Build GRCh38	Gain	TRIM34 OR52N1 OR51B6 OLFM5P OR51M1 OR56A4 TRIM6-TRIM34 OR51B2 OR51I1 OR56A5 OR51I2 OR52E4 OR52B5P OR52N4 TRIM5 OR56A3 OR51B5 OR56A1 TRIM6 OR52L1 OR52N2 OR52E8 OR52D1 OR56B1 OR52N5 OR52H1 OR52B6 OR52E6 UBQLNL TRIM22 UBQLN3 OR51Q1
esv989880	Chr.11:5737008 - 5743849 on Build GRCh38	Deletion	OR52N4 OR56B1
esv3547261	Chr.11:5738814 - 5741207 on Build GRCh38	Deletion	OR52N4
nsv1151296	Chr.11:5738879 - 5741138 on Build GRCh38	Deletion	OR52N4
esv3625248	Chr.11:5738856 - 5741136 on Build GRCh38	Loss	OR52N4
esv3258829	Chr.11:5738857 - 5741135 on Build GRCh38	Deletion	OR52N4
esv2744066	Chr.11:5738832 - 5741140 on Build GRCh38	Deletion	OR52N4
nsv8783	Chr.11:5738854 - 5747681 on Build GRCh38	Gain	OR52N4
esv2640046	Chr.11:5738282 - 5741839 on Build GRCh38	Deletion	OR52N4
dgv1610n54	Chr.11:5738876 - 5740531 on Build GRCh38	Loss	OR52N4
nsv1041568	Chr.11:5564486 - 5744458 on Build GRCh38	Loss	TRIM34 OR52B6 TRIM6 TRIM6-TRIM34 TRIM22 OR52N4 TRIM5 OR56B1
nsv832058	Chr.11:5726364 - 5905584 on Build GRCh38	Gain	OR52N1 OR52N2 OR52E6 OR52E4 OR52N4 OR52E8 OR56B1 OR52N5

More Information

Additional Information:

For this assay, SNP(s) [rs78159603] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

• Set Membership: Intragenic, Intronic, Non-exonic, DGV Variation

Panther Classification:

Molecular Function -

transmembrane signal receptor

Gene Ontology Categories:

Process(es)

signal transduction
G-protein coupled receptor signaling pathway
detection of chemical stimulus involved in sensory perception of smell

Function(s)

G-protein coupled receptor activity
olfactory receptor activity