Hs04398822_cn

• Gene Symbol: LSP1
• Assay Reference Genome Location: Chr.11:1865659 on build GRCh38
• Cytoband: 11p15.5

Target Gene Details

• Entrez Gene ID: 4046
• Gene Name: lymphocyte-specific protein 1
• Gene Aliases: WP34, pp52
• Location: Chr.11:1852970-1892263 on Build GRCh38
• Assay Gene Location: Within Intron 2

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
LSP1	NM_001242932.1			NP_001229861.1
	NM_002339.2			NP_002330.1
	AK092071.1
	AK222733.1			BAD96453.1
	AK290279.1
	BC001785.1			AAH01785.1
	CR541728.1			CAG46529.1
	CR541754.1			CAG46554.1
	S67783.1			AAB29545.1
	X55188.1			CAA38971.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv951282	Chr.11:1862771 - 1894970 on Build GRCh38	Deletion	MIR7847 LSP1
nsv1159792	Chr.11:1844881 - 1887776 on Build GRCh38	Deletion	MIR4298 MIR7847 LSP1
nsv522320	Chr.11:1835882 - 1996938 on Build GRCh38	Loss	SYT8 H19 TNNT3 SNORD131 MIR675 MRPL23-AS1 MIR7847 HOTS MRPL23 LSP1 MIR4298 LINC01219 LINC01150 TNNI2
nsv1047474	Chr.11:1803515 - 2043381 on Build GRCh38	Gain	SYT8 H19 TNNT3 SNORD131 MIR675 MRPL23-AS1 MIR7847 HOTS MRPL23 LSP1 MIR4298 LINC01219 LINC01150 TNNI2
nsv467648	Chr.11:1853174 - 1891496 on Build GRCh38	Loss	MIR4298 MIR7847 LSP1
nsv553058	Chr.11:1863112 - 1892147 on Build GRCh38	Loss	MIR7847 LSP1
nsv553050	Chr.11:1813024 - 1884944 on Build GRCh38	Loss	MIR4298 SYT8 MIR7847 TNNI2 LSP1
dgv1565n54	Chr.11:1844330 - 1891496 on Build GRCh38	Loss	MIR4298 MIR7847 LSP1
nsv553053	Chr.11:1836040 - 1887776 on Build GRCh38	Loss	MIR4298 SYT8 MIR7847 TNNI2 LSP1
esv29980	Chr.11:1820597 - 2097889 on Build GRCh38	Loss	SYT8 H19 TNNT3 SNORD131 MIR675 MRPL23-AS1 MIR7847 HOTS MRPL23 LSP1 MIR4298 LINC01219 LINC01150 TNNI2
nsv553047	Chr.11:1733170 - 2418537 on Build GRCh38	Gain	SYT8 H19 INS-IGF2 MRPL23-AS1 MIR7847 CD81-AS1 MIR4298 IFITM10 TRPM5 TH CTSD ASCL2 C11orf21 LINC01150 TNNI2 CD81 TNNT3 IGF2-AS SNORD131 MIR675 MIR483 HOTS MRPL23 IGF2 LSP1 INS LINC01219 TSPAN32 MIR4686 TSSC4

More Information

Additional Information:

For this assay, SNP(s) [rs113215977] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

• Set Membership: Intragenic, Intronic, Non-exonic, DGV Variation

Panther Classification:

Molecular Function -

non-motor actin binding protein

Gene Ontology Categories:

Process(es)

movement of cell or subcellular component
chemotaxis
cellular defense response
signal transduction

Function(s)

actin binding
signal transducer activity