Hs04445780_cn

• Gene Symbol: FSD2
• Assay Reference Genome Location: Chr.15:82755898 on build GRCh38
• Cytoband: 15q25.2

Target Gene Details

• Entrez Gene ID: 123722
• Gene Name: fibronectin type III and SPRY domain containing 2
• Gene Aliases: SPRYD1
• Location: Chr.15:82755365-82807698 on Build GRCh38
• Assay Gene Location: Within Exon 15

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
FSD2	NM_001007122.3	13	5883	NP_001007123.1
	NM_001281805.1	13	5865	NP_001268734.1
	NM_001281806.1	12	5748	NP_001268735.1
	AL833295.1	13	5883

Target Gene Details

• Entrez Gene ID: 677778
• Gene Name: small Cajal body-specific RNA 15
• Gene Aliases: ACA45
• Location: Chr.15:82755945-82756071 on Build GRCh38
• Assay Gene Location: Overlaps - Exon 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
SCARNA15	NR_003011.1
	AJ609485.1

Target Gene Details

• Entrez Gene ID: 100505616
• Gene Name: small nucleolar RNA host gene 21
• Gene Aliases: FSD2-AS1, SCARNA15HG
• Location: Chr.15:82750564-82757206 on Build GRCh38
• Assay Gene Location: Within Intron 2

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
SNHG21	NR_110096.1
	NR_110097.1
	NR_110098.1
	AA284521.1
	BX112407.1
	CF129490.1
	CK904397.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv469557	Chr.15:82749011 - 82891877 on Build GRCh38	Loss	WHAMM SNHG21 FSD2 HOMER2 SCARNA15
dgv2637n100	Chr.15:82568764 - 82803755 on Build GRCh38	Gain	CPEB1 AP3B2 LOC338963 ACTG1P17 SNHG21 CPEB1-AS1 FSD2 SCARNA15
nsv471687	Chr.15:82749012 - 82891877 on Build GRCh38	Gain	WHAMM SNHG21 FSD2 HOMER2 SCARNA15
nsv817702	Chr.15:82630710 - 82788672 on Build GRCh38	Loss	CPEB1 AP3B2 LOC338963 ACTG1P17 SNHG21 CPEB1-AS1 FSD2 SCARNA15
esv34318	Chr.15:82614804 - 82784743 on Build GRCh38	Loss	CPEB1 AP3B2 LOC338963 ACTG1P17 SNHG21 CPEB1-AS1 FSD2 SCARNA15
esv2674021	Chr.15:82628241 - 82789040 on Build GRCh38	Deletion	CPEB1 AP3B2 LOC338963 ACTG1P17 SNHG21 CPEB1-AS1 FSD2 SCARNA15

More Information

Additional Information:

For this assay, SNP(s) [rs73443066] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

• Set Membership: Intragenic, Exonic, Intronic, Non-exonic, DGV Variation

Panther Classification:

Molecular Function -

ubiquitin-protein ligase

Gene Ontology Categories:

Function(s)

protein binding