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See other RAB40C CNV Assays ›
Gene Symbol
RAB40C
Assay Reference Genome
Location

Chr.16:613891 on build GRCh38
Cytoband
16p13.3
Assay ID Hs04460192_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 57799

Gene Name:

 RAB40C, member RAS oncogene family

Gene Aliases:

 RARL, RASL8C

Location:

 Chr.16:589357-629273 on Build GRCh38

Assay Gene Location:

 Within Intron 4
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
RAB40C NM_001172663.1 NP_001166134.1
NM_001172664.1 NP_001166135.1
NM_001172665.1 NP_001166136.1
NM_001172666.1 NP_001166137.1
NM_021168.4 NP_066991.3
AY823398.1 AAV83924.1
BC028696.1 AAH28696.1
BG696681.1
BG715678.1
BM545442.1
BQ685517.1
BX442451.2
CX783728.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
dgv4824n54 Chr.16:605686 - 670986 on Build GRCh38 Loss METTL26 WDR90 MCRIP2 RAB40C LOC105371038 LOC100287175 WFIKKN1 RHOT2
nsv833113 Chr.16:506513 - 628160 on Build GRCh38 Loss PRR35 LINC00235 MIR5587 RAB40C NHLRC4 LOC101929280 LOC107987233 RAB11FIP3 PIGQ CAPN15 MIR3176
nsv1040486 Chr.16:600788 - 627854 on Build GRCh38 Gain RAB40C
esv2422427 Chr.16:10001 - 2723164 on Build GRCh38 Duplication PRR35 HBZ LOC105371049 SPSB3 MEIOB HBM AMDHD2 PRSS27 MRPL28 ECI1 MIR940 MIR4516 NHLRC4 RAB11FIP3 PDPK1 RHOT2 C1QTNF8 TBL3 SLC9A3R2 RGS11 LOC105371184 TELO2 CCNF RPL23AP5 BRICD5 LMF1-AS1 MIR6859-4 WDR90 E4F1 SNRNP25 MSLN TPSD1 NARFL GNPTG CLCN7 HAGH TSC2 NTHL1 FAM173A ERVK13-1 RPUSD1 SYNGR3 MLST8 RAB40C NME4 SNORA10 SNORD60 IFT140 TBC1D24 RNPS1 LOC107987233 PRSS29P WDR24 TRAF7 SNORA64 RNF151 TMEM204 RHBDF1 PRR25 STUB1 HS3ST6 ARHGDIG CCDC154 LINC00254 CHTF18 CRAMP1 TPSAB1 RAB26 LOC106660606 EME2 MCRIP2 LOC105371047 GNG13 FLJ42627 CAPN15 MIR3177 BAIAP3 FBXL16 LOC105371045 HBA1 SNORA78 NTN3 DECR2 ABCA3 WASIR2 MIR4717 UNKL C16orf59 PDIA2 NME3 GFER MIR3180-5 LINC00235 LOC100134368 LOC652276 MIR6768 IGFALS METRN RPL3L HBQ1 LOC107984876 MRPS34 LOC729652 AXIN1 MPG RHBDL1 CASKIN1 HBA2 NOXO1 MIR3677 LUC7L PIGQ MIR3176 MIR1225 TMEM8A ABCA17P POLR3K SSTR5-AS1 MAPK8IP3 MIR6767 PGP ATP6V0C SNHG9 SNHG19 NUBP2 DDX11L10 TPSB2 JMJD8 UBE2I RPS2 MIR6511B1 SSTR5 MSRB1 FAM234A SOX8 DNASE1L2 MIR3178 LOC100287175 WFIKKN1 ZNF598 NDUFB10 CACNA1H FAHD1 LMF1 NPRL3 LOC105371038 PTX4 KCTD5 MIR5587 TSR3 CCDC78 LOC105371046 CEMP1 METTL26 HAGHL NPW HN1L PKD1 C16orf91 LOC101929280 TPSG1 MIR662
nsv471063 Chr.16:520623 - 852322 on Build GRCh38 Loss PRR35 FAM173A RPUSD1 LINC00235 RAB40C LOC107987233 METRN LOC100287175 WDR24 WFIKKN1 RHBDL1 NHLRC4 LOC105371038 PRR25 STUB1 RAB11FIP3 PIGQ MIR3176 RHOT2 CHTF18 MIR5587 MCRIP2 LOC105371184 CCDC78 GNG13 CAPN15 FBXL16 METTL26 WDR90 HAGHL MSLN NARFL LOC101929280 JMJD8 MIR662
nsv526903 Chr.16:451362 - 810673 on Build GRCh38 Loss PRR35 FAM173A RPUSD1 LINC00235 RAB40C LOC107987233 METRN LOC100287175 WDR24 WFIKKN1 RHBDL1 NHLRC4 LOC105371038 PRR25 STUB1 RAB11FIP3 PIGQ MIR3176 RHOT2 CHTF18 MIR5587 MCRIP2 LOC105371184 CCDC78 GNG13 CAPN15 FBXL16 METTL26 WDR90 HAGHL MSLN NARFL LOC101929280 JMJD8 MIR662
nsv952898 Chr.16:495001 - 1132900 on Build GRCh38 Deletion PRR35 FAM173A SSTR5 RPUSD1 LINC00235 RAB40C SOX8 LOC107987233 METRN LOC100287175 WDR24 WFIKKN1 LOC107984876 RHBDL1 LMF1 NHLRC4 LOC105371038 PRR25 STUB1 RAB11FIP3 PIGQ MIR3176 RHOT2 C1QTNF8 CHTF18 MIR5587 MCRIP2 LOC105371184 CCDC78 GNG13 SSTR5-AS1 CAPN15 FBXL16 LMF1-AS1 METTL26 WDR90 HAGHL MSLN NARFL LOC101929280 JMJD8 MIR662
dgv4823n54 Chr.16:562698 - 662867 on Build GRCh38 Loss PRR35 METTL26 WDR90 MCRIP2 RAB40C NHLRC4 LOC101929280 LOC107987233 LOC105371038 LOC100287175 PIGQ WFIKKN1
nsv571012 Chr.16:583354 - 748489 on Build GRCh38 Loss FAM173A MCRIP2 RAB40C LOC105371184 CCDC78 METRN LOC100287175 WDR24 FBXL16 WFIKKN1 METTL26 WDR90 HAGHL RHBDL1 NARFL LOC101929280 LOC105371038 STUB1 PIGQ JMJD8 RHOT2
nsv1160326 Chr.16:580902 - 804689 on Build GRCh38 Duplication FAM173A RPUSD1 RAB40C METRN LOC100287175 WDR24 WFIKKN1 RHBDL1 LOC105371038 STUB1 PIGQ RHOT2 CHTF18 MCRIP2 LOC105371184 CCDC78 GNG13 FBXL16 METTL26 WDR90 HAGHL MSLN NARFL LOC101929280 JMJD8 MIR662
nsv1160325 Chr.16:506925 - 836376 on Build GRCh38 Duplication PRR35 FAM173A RPUSD1 LINC00235 RAB40C LOC107987233 METRN LOC100287175 WDR24 WFIKKN1 RHBDL1 NHLRC4 LOC105371038 PRR25 STUB1 RAB11FIP3 PIGQ MIR3176 RHOT2 CHTF18 MIR5587 MCRIP2 LOC105371184 CCDC78 GNG13 CAPN15 FBXL16 METTL26 WDR90 HAGHL MSLN NARFL LOC101929280 JMJD8 MIR662

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More Information


Set Membership:

 Intragenic Intronic Non-exonic DGV Variation

Gene Ontology Categories:

Function(s) Process(es)


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