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See other RAB40C CNV Assays ›
Gene Symbol
RAB40C
Assay Reference Genome
Location

Chr.16:613474 on build GRCh38
Cytoband
16p13.3
Assay ID Hs04460225_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 57799

Gene Name:

 RAB40C, member RAS oncogene family

Gene Aliases:

 RARL, RASL8C

Location:

 Chr.16:589357-629273 on Build GRCh38

Assay Gene Location:

 Within Intron 4
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
RAB40C NM_001172663.1 NP_001166134.1
NM_001172664.1 NP_001166135.1
NM_001172665.1 NP_001166136.1
NM_001172666.1 NP_001166137.1
NM_021168.4 NP_066991.3
AY823398.1 AAV83924.1
BC028696.1 AAH28696.1
BG696681.1
BG715678.1
BM545442.1
BQ685517.1
BX442451.2
CX783728.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
esv2422427 Chr.16:10001 - 2723164 on Build GRCh38 Duplication ARHGDIG LMF1 RAB40C MIR4717 PTX4 NPW CRAMP1 SNORD60 CEMP1 MEIOB TSC2 MIR5587 ERVK13-1 FAM234A MIR6511B1 RAB11FIP3 AMDHD2 MSLN NHLRC4 IGFALS MIR3178 FBXL16 LINC00235 CLCN7 MIR3677 MIR662 SNORA10 DDX11L10 TBL3 LOC652276 MAPK8IP3 NME3 TPSAB1 GNPTG HBM RHBDF1 TRAF7 MRPS34 TELO2 BAIAP3 LUC7L FLJ42627 PGP CACNA1H MIR6859-4 TBC1D24 TSR3 NPRL3 LOC106660606 ABCA3 SNORA64 LOC105371184 TMEM204 IFT140 SPSB3 CAPN15 SYNGR3 E4F1 SSTR5 KCTD5 LOC107987233 LOC101929280 SLC9A3R2 SNORA78 NDUFB10 RNF151 PRR25 JMJD8 METRN WASIR2 CCDC154 C16orf91 ZNF598 SOX8 TPSG1 SNHG19 FAHD1 LOC107984876 UNKL RGS11 HBZ RPL23AP5 DECR2 HBA2 METTL26 MIR6768 HN1L PIGQ HS3ST6 CASKIN1 GFER RAB26 NARFL PRR35 RNPS1 RPS2 LMF1-AS1 LINC00254 EME2 MIR3176 PKD1 MRPL28 MIR940 RPUSD1 LOC105371047 RHOT2 PDPK1 NTN3 BRICD5 TPSD1 STUB1 NOXO1 LOC105371049 SNHG9 MLST8 PRSS29P FAM173A C1QTNF8 LOC100134368 ABCA17P MIR3177 HAGHL SNRNP25 GNG13 WFIKKN1 ATP6V0C CCNF HBA1 PDIA2 AXIN1 LOC105371038 RHBDL1 WDR24 PRSS27 MSRB1 CHTF18 ECI1 MIR6767 CCDC78 LOC729652 MPG WDR90 NME4 RPL3L HBQ1 TPSB2 POLR3K C16orf59 TMEM8A MIR1225 MCRIP2 LOC105371046 MIR3180-5 NTHL1 LOC100287175 SSTR5-AS1 NUBP2 UBE2I HAGH LOC105371045 DNASE1L2 MIR4516
nsv471063 Chr.16:520623 - 852322 on Build GRCh38 Loss LOC105371038 METTL26 RHBDL1 WDR24 PIGQ RAB40C CHTF18 NARFL PRR35 CCDC78 MIR5587 LOC105371184 MIR3176 RAB11FIP3 WDR90 CAPN15 RPUSD1 RHOT2 MSLN NHLRC4 STUB1 FBXL16 LINC00235 LOC107987233 LOC101929280 MIR662 MCRIP2 FAM173A PRR25 JMJD8 LOC100287175 METRN HAGHL GNG13 WFIKKN1
nsv526903 Chr.16:451362 - 810673 on Build GRCh38 Loss LOC105371038 METTL26 RHBDL1 WDR24 PIGQ RAB40C CHTF18 NARFL PRR35 CCDC78 MIR5587 LOC105371184 MIR3176 RAB11FIP3 WDR90 CAPN15 RPUSD1 RHOT2 MSLN NHLRC4 STUB1 FBXL16 LINC00235 LOC107987233 LOC101929280 MIR662 MCRIP2 FAM173A PRR25 JMJD8 LOC100287175 METRN HAGHL GNG13 WFIKKN1
nsv952898 Chr.16:495001 - 1132900 on Build GRCh38 Deletion LOC105371038 METTL26 RHBDL1 WDR24 PIGQ LMF1 RAB40C CHTF18 NARFL PRR35 CCDC78 LMF1-AS1 MIR5587 LOC105371184 MIR3176 RAB11FIP3 WDR90 CAPN15 RPUSD1 RHOT2 MSLN NHLRC4 SSTR5 STUB1 FBXL16 LINC00235 LOC107987233 LOC101929280 MIR662 MCRIP2 FAM173A C1QTNF8 PRR25 JMJD8 LOC100287175 METRN SSTR5-AS1 HAGHL GNG13 WFIKKN1 SOX8 LOC107984876
esv27398 Chr.16:611067 - 613587 on Build GRCh38 Loss RAB40C
nsv571012 Chr.16:583354 - 748489 on Build GRCh38 Loss FBXL16 LOC105371038 LOC101929280 METTL26 RHBDL1 MCRIP2 WDR24 PIGQ FAM173A RAB40C JMJD8 NARFL LOC100287175 METRN HAGHL CCDC78 LOC105371184 WFIKKN1 WDR90 RHOT2 STUB1
nsv1160326 Chr.16:580902 - 804689 on Build GRCh38 Duplication LOC105371038 METTL26 RHBDL1 WDR24 PIGQ RAB40C CHTF18 NARFL CCDC78 LOC105371184 WDR90 RPUSD1 RHOT2 MSLN STUB1 FBXL16 LOC101929280 MIR662 MCRIP2 FAM173A JMJD8 LOC100287175 METRN HAGHL GNG13 WFIKKN1
nsv1160325 Chr.16:506925 - 836376 on Build GRCh38 Duplication LOC105371038 METTL26 RHBDL1 WDR24 PIGQ RAB40C CHTF18 NARFL PRR35 CCDC78 MIR5587 LOC105371184 MIR3176 RAB11FIP3 WDR90 CAPN15 RPUSD1 RHOT2 MSLN NHLRC4 STUB1 FBXL16 LINC00235 LOC107987233 LOC101929280 MIR662 MCRIP2 FAM173A PRR25 JMJD8 LOC100287175 METRN HAGHL GNG13 WFIKKN1
dgv4824n54 Chr.16:605686 - 670986 on Build GRCh38 Loss LOC100287175 LOC105371038 METTL26 MCRIP2 WFIKKN1 WDR90 RHOT2 RAB40C
nsv833113 Chr.16:506513 - 628160 on Build GRCh38 Loss PRR35 LINC00235 LOC107987233 LOC101929280 MIR5587 PIGQ MIR3176 RAB11FIP3 CAPN15 RAB40C NHLRC4
nsv1040486 Chr.16:600788 - 627854 on Build GRCh38 Gain RAB40C
dgv4823n54 Chr.16:562698 - 662867 on Build GRCh38 Loss LOC100287175 PRR35 LOC105371038 LOC107987233 LOC101929280 METTL26 MCRIP2 PIGQ WFIKKN1 WDR90 RAB40C NHLRC4
esv2446759 Chr.16:611108 - 613495 on Build GRCh38 Deletion RAB40C

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More Information


Set Membership:

 Intragenic Intronic Non-exonic DGV Variation

Gene Ontology Categories:

Function(s) Process(es)


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