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See other SULT1A1 CNV Assays ›
Gene Symbol
SULT1A1
Assay Reference Genome
Location

Chr.16:28610711 on build GRCh38
Cytoband
16p11.2
Assay ID Hs04461762_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 6817

Gene Name:

 sulfotransferase family 1A member 1

Gene Aliases:

 HAST1/HAST2, P-PST, PST, ST1A1, ST1A3, STP, STP1, TSPST1

Location:

 Chr.16:28605587-28623586 on Build GRCh38

Assay Gene Location:

 Within Intron 2
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
SULT1A1 NM_177536.3 NP_803880.1
XM_017023607.1 XP_016879096.1
XM_017023611.1 XP_016879100.1
XM_017023612.1 XP_016879101.1
XM_017023613.1 XP_016879102.1
AL558375.3
BC110887.1 AAI10888.1
BI459867.1
BI460081.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv1127483 Chr.16:28597997 - 28610991 on Build GRCh38 Deletion SULT1A1
dgv4975n54 Chr.16:28598169 - 28612581 on Build GRCh38 Gain+Loss SULT1A1
nsv827607 Chr.16:28597432 - 28615658 on Build GRCh38 Gain+Loss SULT1A1
nsv1115500 Chr.16:28599179 - 28614079 on Build GRCh38 Duplication SULT1A1
nsv9416 Chr.16:28588506 - 28616750 on Build GRCh38 Gain+Loss SULT1A2 SGF29 SULT1A1
nsv820569 Chr.16:28597073 - 28615578 on Build GRCh38 Duplication SULT1A2 SULT1A1
dgv501e214 Chr.16:28603186 - 28615595 on Build GRCh38 Gain SULT1A1
nsv509608 Chr.16:28449797 - 28632895 on Build GRCh38 Insertion SULT1A2 IL27 SGF29 SULT1A1 CLN3 APOBR NUPR1
nsv984300 Chr.16:28592283 - 28615463 on Build GRCh38 Duplication SULT1A2 SULT1A1
nsv819128 Chr.16:28597886 - 28620160 on Build GRCh38 Loss SULT1A1
esv2714170 Chr.16:28596798 - 28611002 on Build GRCh38 Deletion SULT1A2 SULT1A1
esv24682 Chr.16:28598077 - 28615593 on Build GRCh38 Gain+Loss SULT1A1
nsv1059555 Chr.16:28373144 - 29195838 on Build GRCh38 Gain NPIP SULT1A2 TUFM LOC107984832 SGF29 SH2B1 LAT NFATC2IP ATXN2L ATP2A1-AS1 MIR6862-2 NPIPB8 SPNS1 ATP2A1 RABEP2 CLN3 NUPR1 NPIPB9 MIR6862-1 LOC101928215 MIR4721 EIF3CL MIR4517 IL27 EIF3C CD19 SULT1A1 APOBR RRN3P2
dgv4971n54 Chr.16:28592568 - 28610911 on Build GRCh38 Loss SULT1A2 SULT1A1
dgv4981n54 Chr.16:28603413 - 28610911 on Build GRCh38 Loss SULT1A1
nsv1066415 Chr.16:28581736 - 28826752 on Build GRCh38 Gain MIR6862-2 NPIPB8 SULT1A2 EIF3C SGF29 SULT1A1 NPIPB9 ATXN2L
nsv435671 Chr.16:28601399 - 28611522 on Build GRCh38 Deletion SULT1A1
nsv827608 Chr.16:28603323 - 28611326 on Build GRCh38 Gain+Loss SULT1A1
dgv4972n54 Chr.16:28597166 - 28708113 on Build GRCh38 Loss NPIPB8 EIF3C SULT1A1
nsv1153455 Chr.16:28599078 - 28615579 on Build GRCh38 Duplication SULT1A1
esv2758640 Chr.16:28163817 - 29139232 on Build GRCh38 Gain+Loss NPIP SULT1A2 TUFM XPO6 SGF29 SH2B1 LAT NFATC2IP ATXN2L ATP2A1-AS1 MIR6862-2 NPIPB8 SPNS1 ATP2A1 RABEP2 CLN3 NUPR1 NPIPB9 MIR6862-1 LOC101928215 MIR4721 SBK1 EIF3CL MIR4517 IL27 EIF3C CD19 SULT1A1 APOBR RRN3P2 NPIPB6
esv33847 Chr.16:28604349 - 28611146 on Build GRCh38 Gain SULT1A1
dgv4979n54 Chr.16:28602644 - 28610911 on Build GRCh38 Gain+Loss SULT1A1
esv3553298 Chr.16:28597180 - 28611547 on Build GRCh38 Deletion SULT1A1
nsv1775 Chr.16:28595445 - 28619570 on Build GRCh38 Insertion SULT1A2 SULT1A1
nsv833182 Chr.16:28538055 - 28672127 on Build GRCh38 Gain NPIPB8 SULT1A2 SGF29 SULT1A1 NUPR1
esv3892822 Chr.16:28604387 - 28620264 on Build GRCh38 Loss SULT1A1

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More Information


Important Information

Individuals may carry null alleles or extra copies of SULT1A1. Hs04461762_cn specifically targets SULT1A1 intron 2 sequences that lie 3' to the major segmental duplication breakpoint and detects most SULT1A1 CNV events (e.g. Vijzelaar et al. 2018 Pharmacogenomics 19:761-770).

Set Membership:

 Intragenic Intronic Non-exonic DGV Variation

Panther Classification:

Molecular Function -

transferase

Gene Ontology Categories:

Function(s) Process(es)


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