Hs04468800_cn

• Gene Symbol: KRT19
• Assay Reference Genome Location: Chr.17:41526329 on build GRCh38
• Cytoband: 17q21.2

Target Gene Details

• Entrez Gene ID: 3880
• Gene Name: keratin 19
• Gene Aliases: CK19, K19, K1CS
• Location: Chr.17:41523617-41528389 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
KRT19	NM_002276.4			NP_002267.2
	AK313261.1
	BC002539.2
	BC007628.1			AAH07628.1
	BC010409.2
	BC067744.1
	BC084574.1
	BG490639.1
	DA068330.1
	Y00503.1			CAA68556.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
esv2760463	Chr.17:41510342 - 41532347 on Build GRCh38	Gain	KRT19 KRT15 MIR6510
esv3640589	Chr.17:41504761 - 41536129 on Build GRCh38	Gain	KRT19 KRT15 MIR6510 KRT13
esv34903	Chr.17:41489914 - 41632423 on Build GRCh38	Gain	LINC00974 KRT42P KRT19 KRT17 KRT15 KRT14 MIR6510 KRT13 KRT16 KRT9
esv3640588	Chr.17:41488647 - 41572595 on Build GRCh38	Gain	KRT36 LINC00974 KRT19 KRT15 MIR6510 KRT13 KRT9
nsv1063389	Chr.17:41519342 - 41579831 on Build GRCh38	Gain	LINC00974 KRT19 KRT15 KRT9
nsv510711	Chr.17:41455775 - 41574964 on Build GRCh38	Deletion	KRT36 LINC00974 KRT35 KRT19 KRT15 MIR6510 KRT13 KRT9 KRT32
nsv442419	Chr.17:41510925 - 41526616 on Build GRCh38	Gain	KRT19 KRT15 MIR6510
nsv827992	Chr.17:41488451 - 41630341 on Build GRCh38	Gain	KRT36 LINC00974 KRT42P KRT19 KRT17 KRT15 KRT14 MIR6510 KRT13 KRT16 KRT9
nsv9555	Chr.17:41487965 - 41573526 on Build GRCh38	Gain	KRT36 LINC00974 KRT19 KRT15 MIR6510 KRT13 KRT9
nsv526466	Chr.17:41480992 - 41534847 on Build GRCh38	Gain	KRT36 KRT35 KRT19 KRT15 MIR6510 KRT13
esv2758690	Chr.17:41145123 - 41740591 on Build GRCh38	Gain+Loss	KRT36 KRTAP16-1 KRT38 KRT42P KRT35 KRT14 KRTAP9-7 KRTAP29-1 KRT9 KRT33B KRT33A KRTAP17-1 KRTAP4-1 KRTAP9-2 KRTAP4-5 KRTAP4-3 KRT17 KRTAP9-6 KRTAP9-9 KRT16 KRTAP9-1 KRTAP9-4 KRT32 KRT19 KRT37 KRTAP9-8 KRTAP9-3 HAP1 LINC00974 KRTAP4-2 LOC100505782 KRT34 GAST KRTAP4-4 KRT15 MIR6510 KRT13 KRT31 EIF1

More Information

Additional Information:

For this assay, SNP(s) [rs78714899] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

• Set Membership: Intragenic, Intronic, Non-exonic, DGV Variation

Gene Ontology Categories:

Process(es)

Notch signaling pathway
viral process
response to estrogen
sarcomere organization
cell differentiation involved in embryonic placenta development

Function(s)

structural constituent of cytoskeleton
protein binding
structural constituent of muscle
protein complex binding