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See other GPANK1 CNV Assays ›
Gene Symbol
GPANK1
Assay Reference Genome
Location

Chr.6:31663469 on build GRCh38
Cytoband
6p21.33
Assay ID Hs04892810_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 7918

Gene Name:

 G-patch domain and ankyrin repeats 1

Gene Aliases:

 ANKRD59, BAT4, D6S54E, G5, GPATCH10

Location:

 Chr.6:31661229-31666283 on Build GRCh38

Assay Gene Location:

 Within Intron 3
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
GPANK1 NM_001199237.1 NP_001186166.1
NM_001199238.1 NP_001186167.1
NM_001199239.1 NP_001186168.1
NM_001199240.1 NP_001186169.1
NM_033177.3 NP_149417.1
XM_005249403.3 XP_005249460.1
XM_006715204.1 XP_006715267.1
XM_011514909.1 XP_011513211.1
XM_011514910.1 XP_011513212.1
AJ420471.1
AK123707.1
AK314056.1
BC008783.1 AAH08783.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv462871 Chr.6:31607499 - 31664357 on Build GRCh38 Loss GPANK1 C6orf47 BAG6 AIF1 MIR6832 APOM PRRC2A SNORA38
nsv1126749 Chr.6:31457323 - 32594423 on Build GRCh38 Deletion MIR6721 SKIV2L CLIC1 DDX39B LTB MIR6833 C2 LY6G6E DDAH2 SNORA38 C4B VWA7 C6orf48 HCG23 GPANK1 C6orf10 LOC101929163 DXO NCR3 MSH5 AIF1 DDX39B-AS1 HSPA1L LSM2 HSPA1A C2-AS1 ATP6V1G2-DDX39B PRRC2A NOTCH4 CSNK2B HLA-DRB6 HLA-DRA ATF6B C6orf25 SAPCD1-AS1 MIR6832 NFKBIL1 NEU1 AGPAT1 MICB HSPA1B PPT2-EGFL8 SAPCD1 GPSM3 C6orf47 MIR4646 HCG26 TNF LY6G6D SNORD117 LY6G5B C4A LOC100287329 SNORD52 PBX2 SNORD48 PPT2 EGFL8 ABHD16A LY6G5C BTNL2 EHMT2 MIR1236 SLC44A4 PRRT1 LY6G6F NELFE RNF5 CFB LY6G6C SNORD84 BAG6 FKBPL APOM STK19 CYP21A1P LTA LOC100507547 HCP5 VARS MCCD1 MSH5-SAPCD1 TNXA CYP21A2 LST1 ATP6V1G2 LOC102725068 TNXB HLA-DRB5 ZBTB12 HLA-DRB1 AGER
nsv1073969 Chr.6:31456422 - 33480523 on Build GRCh38 Deletion SKIV2L PSMB9 DDX39B LTB COL11A2 C2 DDAH2 SNORA38 C6orf48 C6orf10 DXO NCR3 AIF1 HSPA1L HLA-DQB1-AS1 NOTCH4 HLA-DMB CSNK2B HLA-DPA1 MIR6834 C6orf25 SAPCD1-AS1 MIR6832 MIR219A1 NFKBIL1 NEU1 HLA-DOB MICB HSPA1B PPT2-EGFL8 SAPCD1 GPSM3 C6orf47 LY6G6D SNORD117 TAP1 C4A ABHD16A EHMT2 HCG24 PFDN6 PRRT1 NELFE RNF5 SNORD84 PHF1 KIFC1 CYP21A1P PSMB8 HCP5 MSH5-SAPCD1 VPS52 RING1 LOC102725068 HLA-DRB5 HLA-DRB1 MIR6721 CLIC1 RXRB MIR6833 LY6G6E C4B HCG25 VWA7 HCG23 GPANK1 LOC101929163 PPP1R2P1 B3GALT4 MSH5 DDX39B-AS1 LSM2 HSPA1A C2-AS1 ATP6V1G2-DDX39B HLA-DOA ZBTB9 PRRC2A HLA-DRB6 HLA-DPB2 HLA-DRA MIR3135B ATF6B HLA-DPB1 AGPAT1 HSD17B8 RPS18 DAXX MIR4646 HLA-DQB2 HCG26 TNF LY6G5B HLA-DMA SLC39A7 LOC100287329 SNORD52 PBX2 HLA-DQA1 SNORD48 PPT2 EGFL8 TAP2 LY6G5C LOC100294145 BTNL2 ZBTB22 MIR1236 PSMB8-AS1 BRD2 MIR6873 SLC44A4 RGL2 LY6G6F CFB LY6G6C BAG6 FKBPL APOM MIR5004 CUTA STK19 LTA LOC100507547 SYNGAP1 VARS HLA-DQA2 TAPBP MCCD1 HLA-DQB1 TNXA CYP21A2 WDR46 LST1 ATP6V1G2 TNXB ZBTB12 AGER
dgv10403n54 Chr.6:31312324 - 32049763 on Build GRCh38 Loss SKIV2L CLIC1 DDX39B LTB C2 LY6G6E DDAH2 SNORA38 C4B VWA7 C6orf48 GPANK1 DXO NCR3 MSH5 AIF1 DDX39B-AS1 HSPA1L LSM2 HSPA1A C2-AS1 ATP6V1G2-DDX39B PRRC2A CSNK2B MIR6891 MICA C6orf25 SAPCD1-AS1 MIR6832 NFKBIL1 NEU1 MICB HSPA1B SAPCD1 C6orf47 MIR4646 HCG26 TNF LY6G6D SNORD117 LY6G5B C4A LOC100287329 SNORD52 SNORD48 ABHD16A LY6G5C EHMT2 MIR1236 SLC44A4 LY6G6F NELFE CFB LY6G6C SNORD84 BAG6 APOM STK19 CYP21A1P LTA HLA-B HCP5 VARS MCCD1 MSH5-SAPCD1 TNXA CYP21A2 LST1 ATP6V1G2 LOC102725068 TNXB ZBTB12
nsv1112900 Chr.6:31455323 - 33480423 on Build GRCh38 Deletion SKIV2L PSMB9 DDX39B LTB COL11A2 C2 DDAH2 SNORA38 C6orf48 C6orf10 DXO NCR3 AIF1 HSPA1L HLA-DQB1-AS1 NOTCH4 HLA-DMB CSNK2B HLA-DPA1 MIR6834 C6orf25 SAPCD1-AS1 MIR6832 MIR219A1 NFKBIL1 NEU1 HLA-DOB MICB HSPA1B PPT2-EGFL8 SAPCD1 GPSM3 C6orf47 LY6G6D SNORD117 TAP1 C4A ABHD16A EHMT2 HCG24 PFDN6 PRRT1 NELFE RNF5 SNORD84 PHF1 KIFC1 CYP21A1P PSMB8 HCP5 MSH5-SAPCD1 VPS52 RING1 LOC102725068 HLA-DRB5 HLA-DRB1 MIR6721 CLIC1 RXRB MIR6833 LY6G6E C4B HCG25 VWA7 HCG23 GPANK1 LOC101929163 PPP1R2P1 B3GALT4 MSH5 DDX39B-AS1 LSM2 HSPA1A C2-AS1 ATP6V1G2-DDX39B HLA-DOA ZBTB9 PRRC2A HLA-DRB6 HLA-DPB2 HLA-DRA MIR3135B ATF6B HLA-DPB1 AGPAT1 HSD17B8 RPS18 DAXX MIR4646 HLA-DQB2 HCG26 TNF LY6G5B HLA-DMA SLC39A7 LOC100287329 SNORD52 PBX2 HLA-DQA1 SNORD48 PPT2 EGFL8 TAP2 LY6G5C LOC100294145 BTNL2 ZBTB22 MIR1236 PSMB8-AS1 BRD2 MIR6873 SLC44A4 RGL2 LY6G6F CFB LY6G6C BAG6 FKBPL APOM MIR5004 CUTA STK19 LTA LOC100507547 SYNGAP1 VARS HLA-DQA2 TAPBP MCCD1 HLA-DQB1 TNXA CYP21A2 WDR46 LST1 ATP6V1G2 TNXB ZBTB12 AGER
dgv10404n54 Chr.6:31312550 - 32516591 on Build GRCh38 Loss MIR6721 SKIV2L CLIC1 DDX39B LTB MIR6833 C2 LY6G6E DDAH2 SNORA38 C4B VWA7 C6orf48 HCG23 GPANK1 C6orf10 LOC101929163 DXO NCR3 MSH5 AIF1 DDX39B-AS1 HSPA1L LSM2 HSPA1A C2-AS1 ATP6V1G2-DDX39B PRRC2A NOTCH4 CSNK2B MIR6891 MICA HLA-DRA ATF6B C6orf25 SAPCD1-AS1 MIR6832 NFKBIL1 NEU1 AGPAT1 MICB HSPA1B PPT2-EGFL8 SAPCD1 GPSM3 C6orf47 MIR4646 HCG26 TNF LY6G6D SNORD117 LY6G5B C4A LOC100287329 SNORD52 PBX2 SNORD48 PPT2 EGFL8 ABHD16A LY6G5C BTNL2 EHMT2 MIR1236 SLC44A4 PRRT1 LY6G6F NELFE RNF5 CFB LY6G6C SNORD84 BAG6 FKBPL APOM STK19 CYP21A1P LTA LOC100507547 HLA-B HCP5 VARS MCCD1 MSH5-SAPCD1 TNXA CYP21A2 LST1 ATP6V1G2 LOC102725068 TNXB ZBTB12 AGER
nsv1161370 Chr.6:31600692 - 31714252 on Build GRCh38 Deletion ABHD16A LY6G5C MIR6832 LY6G6E SNORA38 LY6G6F GPANK1 C6orf47 MIR4646 BAG6 AIF1 LY6G5B APOM PRRC2A CSNK2B
nsv830627 Chr.6:31528437 - 31692173 on Build GRCh38 Loss ABHD16A DDX39B LY6G5C LTB SNORA38 GPANK1 SNORD84 NCR3 BAG6 AIF1 DDX39B-AS1 APOM ATP6V1G2-DDX39B PRRC2A CSNK2B LTA MIR6832 MCCD1 NFKBIL1 C6orf47 LST1 TNF ATP6V1G2 SNORD117 LY6G5B LOC100287329

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More Information


Set Membership:

 Intragenic Intronic Non-exonic DGV Variation

Gene Ontology Categories:

Process(es)


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