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See other LSM2 CNV Assays ›
Gene Symbol
LSM2
Assay Reference Genome
Location

Chr.6:31801317 on build GRCh38
Cytoband
6p21.33
Assay ID Hs04894976_cn
Size
Availability Made To Order
Catalog # 4400291
Price
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Assay Details

Target Gene Details

Entrez Gene ID:

 57819

Gene Name:

 LSM2 homolog, U6 small nuclear RNA and mRNA degradation associated

Gene Aliases:

 C6orf28, G7B, YBL026W, snRNP

Location:

 Chr.6:31797392-31806984 on Build GRCh38

Assay Gene Location:

 Within Intron 2
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
LSM2 NM_021177.4 NP_067000.1
AF136977.1 AAG49438.1
AF182288.1 AAD56226.1
AF196468.1 AAG33023.1
AJ245416.1 CAB52190.1
BC009192.2 AAH09192.1
BP203102.1
BU189898.1
CR542146.1 CAG46943.1
CR542157.1 CAG46954.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv1126749 Chr.6:31457323 - 32594423 on Build GRCh38 Deletion HSPA1L HLA-DRB1 LY6G5C LY6G6D C6orf25 LY6G6E CYP21A1P DDAH2 MIR1236 STK19 CYP21A2 GPSM3 NCR3 TNXB GPANK1 RNF5 NFKBIL1 HLA-DRB5 SNORD84 ABHD16A FKBPL LST1 HLA-DRB6 CSNK2B CLIC1 TNXA MIR6832 ZBTB12 HCG23 APOM AIF1 VARS EGFL8 ATF6B SLC44A4 AGER C2-AS1 ATP6V1G2-DDX39B MICB LOC101929163 AGPAT1 HLA-DRA C4B PBX2 DDX39B PRRC2A LTB MCCD1 LY6G6C C6orf10 MIR6833 SAPCD1 CFB HSPA1A DXO HCP5 NOTCH4 C6orf47 SKIV2L MIR6721 NEU1 SNORD48 VWA7 SNORD52 SNORA38 MSH5-SAPCD1 C2 HSPA1B HCG26 LOC100287329 TNF C4A SNORD117 PRRT1 BTNL2 MIR4646 NELFE LY6G5B LY6G6F ATP6V1G2 LOC100507547 PPT2 LTA EHMT2 C6orf48 BAG6 LOC102725068 DDX39B-AS1 PPT2-EGFL8 SAPCD1-AS1 LSM2 MSH5
nsv1073969 Chr.6:31456422 - 33480523 on Build GRCh38 Deletion HSPA1L HLA-DRB1 LY6G5C DDAH2 HLA-DPB1 STK19 CYP21A2 GPSM3 SYNGAP1 GPANK1 RNF5 NFKBIL1 SNORD84 PFDN6 FKBPL CSNK2B ZBTB12 HCG23 APOM EGFL8 ATF6B HSD17B8 MIR6834 C2-AS1 ATP6V1G2-DDX39B MICB LOC101929163 AGPAT1 HLA-DQA1 DAXX HLA-DQB2 HLA-DRA PBX2 ZBTB9 PSMB9 HLA-DQB1 PPP1R2P1 SAPCD1 HSPA1A NOTCH4 HLA-DOB C6orf47 SKIV2L CUTA VWA7 SNORD52 PSMB8 SNORA38 B3GALT4 C2 HSPA1B HCG26 TAP1 C4A BTNL2 NELFE HLA-DQA2 LOC100507547 PPT2 MIR6873 LTA EHMT2 SAPCD1-AS1 HLA-DPB2 LSM2 KIFC1 LY6G6D C6orf25 LY6G6E MIR5004 CYP21A1P MIR1236 LOC100294145 NCR3 VPS52 MIR3135B TNXB HLA-DRB5 ABHD16A LST1 HLA-DRB6 CLIC1 WDR46 TNXA MIR6832 AIF1 VARS SLC44A4 TAP2 RPS18 AGER BRD2 C4B ZBTB22 DDX39B RING1 PRRC2A LTB MCCD1 RXRB LY6G6C C6orf10 RGL2 COL11A2 MIR6833 CFB DXO HCP5 HLA-DQB1-AS1 MIR6721 NEU1 HLA-DMB SNORD48 HCG24 PSMB8-AS1 MSH5-SAPCD1 MIR219A1 LOC100287329 TNF TAPBP SNORD117 PRRT1 MIR4646 HLA-DMA PHF1 LY6G5B LY6G6F ATP6V1G2 C6orf48 BAG6 HLA-DPA1 HLA-DOA LOC102725068 SLC39A7 DDX39B-AS1 HCG25 PPT2-EGFL8 MSH5
dgv10403n54 Chr.6:31312324 - 32049763 on Build GRCh38 Loss HSPA1L LY6G5C LY6G6D C6orf25 LY6G6E CYP21A1P DDAH2 MIR6891 MIR1236 STK19 CYP21A2 NCR3 TNXB GPANK1 NFKBIL1 SNORD84 ABHD16A LST1 CSNK2B CLIC1 TNXA MIR6832 ZBTB12 APOM AIF1 VARS SLC44A4 HLA-B C2-AS1 ATP6V1G2-DDX39B MICB C4B DDX39B PRRC2A LTB MCCD1 LY6G6C SAPCD1 CFB HSPA1A DXO HCP5 C6orf47 SKIV2L NEU1 SNORD48 VWA7 SNORD52 SNORA38 MSH5-SAPCD1 C2 HSPA1B HCG26 LOC100287329 TNF C4A SNORD117 MICA MIR4646 NELFE LY6G5B LY6G6F ATP6V1G2 LTA EHMT2 C6orf48 BAG6 LOC102725068 DDX39B-AS1 SAPCD1-AS1 LSM2 MSH5
nsv1112900 Chr.6:31455323 - 33480423 on Build GRCh38 Deletion HSPA1L HLA-DRB1 LY6G5C DDAH2 HLA-DPB1 STK19 CYP21A2 GPSM3 SYNGAP1 GPANK1 RNF5 NFKBIL1 SNORD84 PFDN6 FKBPL CSNK2B ZBTB12 HCG23 APOM EGFL8 ATF6B HSD17B8 MIR6834 C2-AS1 ATP6V1G2-DDX39B MICB LOC101929163 AGPAT1 HLA-DQA1 DAXX HLA-DQB2 HLA-DRA PBX2 ZBTB9 PSMB9 HLA-DQB1 PPP1R2P1 SAPCD1 HSPA1A NOTCH4 HLA-DOB C6orf47 SKIV2L CUTA VWA7 SNORD52 PSMB8 SNORA38 B3GALT4 C2 HSPA1B HCG26 TAP1 C4A BTNL2 NELFE HLA-DQA2 LOC100507547 PPT2 MIR6873 LTA EHMT2 SAPCD1-AS1 HLA-DPB2 LSM2 KIFC1 LY6G6D C6orf25 LY6G6E MIR5004 CYP21A1P MIR1236 LOC100294145 NCR3 VPS52 MIR3135B TNXB HLA-DRB5 ABHD16A LST1 HLA-DRB6 CLIC1 WDR46 TNXA MIR6832 AIF1 VARS SLC44A4 TAP2 RPS18 AGER BRD2 C4B ZBTB22 DDX39B RING1 PRRC2A LTB MCCD1 RXRB LY6G6C C6orf10 RGL2 COL11A2 MIR6833 CFB DXO HCP5 HLA-DQB1-AS1 MIR6721 NEU1 HLA-DMB SNORD48 HCG24 PSMB8-AS1 MSH5-SAPCD1 MIR219A1 LOC100287329 TNF TAPBP SNORD117 PRRT1 MIR4646 HLA-DMA PHF1 LY6G5B LY6G6F ATP6V1G2 C6orf48 BAG6 HLA-DPA1 HLA-DOA LOC102725068 SLC39A7 DDX39B-AS1 HCG25 PPT2-EGFL8 MSH5
dgv10404n54 Chr.6:31312550 - 32516591 on Build GRCh38 Loss HSPA1L LY6G5C LY6G6D C6orf25 LY6G6E CYP21A1P DDAH2 MIR6891 MIR1236 STK19 CYP21A2 GPSM3 NCR3 TNXB GPANK1 RNF5 NFKBIL1 SNORD84 ABHD16A FKBPL LST1 CSNK2B CLIC1 TNXA MIR6832 ZBTB12 HCG23 APOM AIF1 VARS EGFL8 ATF6B SLC44A4 HLA-B AGER C2-AS1 ATP6V1G2-DDX39B MICB LOC101929163 AGPAT1 HLA-DRA C4B PBX2 DDX39B PRRC2A LTB MCCD1 LY6G6C C6orf10 MIR6833 SAPCD1 CFB HSPA1A DXO HCP5 NOTCH4 C6orf47 SKIV2L MIR6721 NEU1 SNORD48 VWA7 SNORD52 SNORA38 MSH5-SAPCD1 C2 HSPA1B HCG26 LOC100287329 TNF C4A SNORD117 PRRT1 BTNL2 MICA MIR4646 NELFE LY6G5B LY6G6F ATP6V1G2 LOC100507547 PPT2 LTA EHMT2 C6orf48 BAG6 LOC102725068 DDX39B-AS1 PPT2-EGFL8 SAPCD1-AS1 LSM2 MSH5

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