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See other TRIM39 CNV Assays ›
Gene Symbol
TRIM39
Assay Reference Genome
Location

Chr.6:30334162 on build GRCh38
Cytoband
6p22.1
Assay ID Hs04925063_cn
Size
Availability Made To Order
Catalog # 4400291
Price
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Assay Details

Target Gene Details

Entrez Gene ID:

 56658

Gene Name:

 tripartite motif containing 39

Gene Aliases:

 RNF23, TFP, TRIM39B

Location:

 Chr.6:30326844-30343729 on Build GRCh38

Assay Gene Location:

 Within Intron 5
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
TRIM39 NM_021253.3 NP_067076.2
NM_172016.2 NP_742013.1
AB046381.1 BAB16374.1
AK292512.1
AX776007.1 CAE11703.1
BC007661.2 AAH07661.1
BC034985.1 AAH34985.1
BT007370.1 AAP36034.1

Target Gene Details

Entrez Gene ID:

 202658

Gene Name:

 TRIM39-RPP21 readthrough

Gene Aliases:

 TRIM39R

Location:

 Chr.6:30329311-30346858 on Build GRCh38

Assay Gene Location:

 Within Intron 2
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
TRIM39-RPP21 NM_001199119.1 NP_001186048.1
AI805914.1
EU012025.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv1074389 Chr.6:29116522 - 31446623 on Build GRCh38 Deletion TRIM39 ZNRD1 MRPS18B TRIM15 DHX16 OR2H2 HCG8 MUC22 IFITM4P HCG9 TRIM10 TRIM26 PPP1R10 NRM GTF2H4 HLA-G TRIM31-AS1 LOC105375014 OR2H1 MUC21 C6orf15 HCG4B HLA-L HLA-E TCF19 LOC101929006 OR12D2 RNF39 ABCF1 TUBB LINC00243 MIR6891 C6orf136 HLA-H POU5F1 OR14J1 LINC01015 OR10C1 PSORS1C1 MIR4640 HLA-B TRIM39-RPP21 OR2J2 TRIM40 PPP1R18 GNL1 HCG17 FLOT1 PSORS1C3 PSORS1C2 DPCR1 ATAT1 MOG LOC554223 HCG4 CDSN RPP21 HLA-A HCG18 SFTA2 HLA-F SNORD32B MICA GABBR1 HCG20 TRIM31 MDC1-AS1 HLA-K HCG22 OR11A1 MIR877 HLA-F-AS1 MAS1L ZNRD1ASP IER3 CCHCR1 UBD PPP1R11 OR5V1 ZFP57 HCG27 HLA-C PRR3 VARS2 OR12D3 DDR1 MDC1 HLA-J
nsv1122126 Chr.6:28628023 - 31244023 on Build GRCh38 Deletion TRIM39 ZNRD1 OR2J3 LINC01623 MRPS18B TRIM15 DHX16 OR2H2 HCG8 MUC22 IFITM4P HCG9 TRIM10 TRIM26 PPP1R10 NRM GTF2H4 HLA-G TRIM31-AS1 LOC105375014 OR2H1 LOC100129636 MUC21 C6orf15 OR2B3 HCG4B HLA-L HLA-E LINC00533 TCF19 LOC101929006 ZNF311 OR2W1 OR12D2 RNF39 ABCF1 TUBB LINC00243 HCG16 C6orf136 HLA-H POU5F1 OR14J1 LINC01015 OR10C1 PSORS1C1 MIR4640 TRIM39-RPP21 HCG14 OR2J2 TRIM40 PPP1R18 LINC01556 GNL1 HCG17 FLOT1 PSORS1C3 PSORS1C2 DPCR1 ATAT1 MOG LOC554223 HCG4 CDSN RPP21 HLA-A HCG18 SFTA2 HLA-F SNORD32B GABBR1 HCG20 TRIM31 MDC1-AS1 HLA-K HCG22 OR11A1 MIR877 HLA-F-AS1 MAS1L ZNRD1ASP IER3 CCHCR1 UBD PPP1R11 OR5V1 ZFP57 HCG27 PRR3 VARS2 OR12D3 DDR1 TRIM27 MDC1 HLA-J
nsv1144137 Chr.6:29720323 - 31338123 on Build GRCh38 Deletion TRIM39 ZNRD1 MRPS18B TRIM15 DHX16 HCG8 MUC22 IFITM4P HCG9 TRIM10 TRIM26 PPP1R10 NRM GTF2H4 HLA-G TRIM31-AS1 LOC105375014 MUC21 C6orf15 HCG4B HLA-L HLA-E TCF19 RNF39 ABCF1 TUBB LINC00243 C6orf136 HLA-H POU5F1 PSORS1C1 MIR4640 TRIM39-RPP21 TRIM40 PPP1R18 GNL1 HCG17 FLOT1 PSORS1C3 PSORS1C2 DPCR1 ATAT1 LOC554223 HCG4 CDSN RPP21 HLA-A HCG18 SFTA2 HLA-F HCG20 TRIM31 MDC1-AS1 HLA-K HCG22 MIR877 HLA-F-AS1 ZNRD1ASP IER3 CCHCR1 PPP1R11 HCG27 HLA-C PRR3 VARS2 DDR1 MDC1 HLA-J
nsv601264 Chr.6:29883666 - 31320716 on Build GRCh38 Loss TRIM39 ZNRD1 MRPS18B TRIM15 DHX16 HCG8 MUC22 HCG9 TRIM10 TRIM26 PPP1R10 NRM GTF2H4 TRIM31-AS1 LOC105375014 MUC21 C6orf15 HCG4B HLA-L HLA-E TCF19 RNF39 ABCF1 TUBB LINC00243 C6orf136 HLA-H POU5F1 PSORS1C1 MIR4640 TRIM39-RPP21 TRIM40 PPP1R18 GNL1 HCG17 FLOT1 PSORS1C3 PSORS1C2 DPCR1 ATAT1 CDSN RPP21 HLA-A HCG18 SFTA2 HCG20 TRIM31 MDC1-AS1 HLA-K HCG22 MIR877 ZNRD1ASP IER3 CCHCR1 PPP1R11 HCG27 HLA-C PRR3 VARS2 DDR1 MDC1 HLA-J
esv3411275 Chr.6:29981607 - 31490616 on Build GRCh38 Duplication TRIM39 ZNRD1 MRPS18B TRIM15 DHX16 HCG8 MUC22 HCG26 TRIM10 TRIM26 PPP1R10 NRM GTF2H4 TRIM31-AS1 LOC105375014 LOC102725068 MUC21 C6orf15 HCP5 HLA-L HLA-E TCF19 RNF39 ABCF1 TUBB LINC00243 MIR6891 C6orf136 POU5F1 PSORS1C1 MIR4640 HLA-B TRIM39-RPP21 TRIM40 PPP1R18 GNL1 HCG17 FLOT1 PSORS1C3 PSORS1C2 DPCR1 ATAT1 CDSN RPP21 HCG18 SFTA2 MICA HCG20 TRIM31 MDC1-AS1 HCG22 MIR877 ZNRD1ASP IER3 CCHCR1 PPP1R11 HCG27 HLA-C PRR3 VARS2 DDR1 MDC1 HLA-J
nsv5241 Chr.6:30333124 - 30367656 on Build GRCh38 Insertion TRIM39 TRIM39-RPP21 RPP21

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