Hs04929673_cn

• Gene Symbol: HOTTIP
• Assay Reference Genome Location: Chr.7:27204528 on build GRCh38
• Cytoband: 7p15.2

Target Gene Details

• Entrez Gene ID: 100316868
• Gene Name: HOXA distal transcript antisense RNA
• Gene Aliases: HOXA-AS6, HOXA13-AS1, NCRNA00213
• Location: Chr.7:27200421-27207259 on Build GRCh38
• Assay Gene Location: Within Intron 2

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
HOTTIP	NR_037843.3
	GU724873.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv606469	Chr.7:27181212 - 27207660 on Build GRCh38	Loss	HOXA11-AS HOTTIP HOXA13 HOXA11
dgv1094n67	Chr.7:27079675 - 27255391 on Build GRCh38	Gain	HOXA4 HOXA11-AS HOXA5 HOXA10 HOXA2 HOTTIP HOXA7 MIR196B HOXA9 HOTAIRM1 HOXA-AS2 HOXA6 EVX1-AS HOXA10-AS EVX1 HOXA13 HOXA10-HOXA9 HOXA3 HOXA1 HOXA-AS3 HOXA11
nsv519583	Chr.7:27204343 - 27258645 on Build GRCh38	Gain	EVX1-AS HOTTIP EVX1
nsv5675	Chr.7:27178983 - 27213211 on Build GRCh38	Insertion	HOXA11-AS HOXA10 HOTTIP HOXA13 HOXA10-HOXA9 HOXA11
nsv824042	Chr.7:27129612 - 27207613 on Build GRCh38	Gain	HOXA4 HOXA11-AS HOXA5 HOXA10 HOTTIP HOXA7 MIR196B HOXA9 HOXA6 HOXA10-AS HOXA13 HOXA10-HOXA9 HOXA3 HOXA-AS3 HOXA11
nsv606468	Chr.7:27162670 - 27241685 on Build GRCh38	Loss	HOXA11-AS HOXA10 EVX1-AS HOXA10-AS HOTTIP MIR196B HOXA13 HOXA10-HOXA9 HOXA9 HOXA11

More Information

Additional Information:

For this assay, SNP(s) [rs144730930] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

• Set Membership: Intragenic, Intronic, Non-exonic, DGV Variation