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See other CSGALNACT1 CNV Assays ›
Gene Symbol
CSGALNACT1
Assay Reference Genome
Location

Chr.8:19415430 on build GRCh38
Cytoband
8p21.3
Assay ID Hs05062136_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 55790

Gene Name:

 chondroitin sulfate N-acetylgalactosaminyltransferase 1

Gene Aliases:

 CSGalNAcT-1, ChGn, beta4GalNAcT

Location:

 Chr.8:19404161-19757940 on Build GRCh38

Assay Gene Location:

 Within Intron 28
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
CSGALNACT1 NM_001130518.1 NP_001123990.1
NM_018371.4 NP_060841.5
NR_024040.1
XM_006716358.2 XP_006716421.1
XM_006716359.2 XP_006716422.1
XM_006716360.2 XP_006716423.1
XM_006716361.2 XP_006716424.1
XM_006716362.2 XP_006716425.1
XM_006716363.1 XP_006716426.1
XM_006716364.3 XP_006716427.1
XM_011544578.1 XP_011542880.1
XM_011544579.1 XP_011542881.1
XM_011544580.1 XP_011542882.1
XM_011544582.1 XP_011542884.1
XM_011544583.1 XP_011542885.1
XM_011544584.1 XP_011542886.1
XM_011544585.2 XP_011542887.1
XM_017013623.1 XP_016869112.1
XM_017013624.1 XP_016869113.1
XM_017013625.1 XP_016869114.1
XM_017013626.1 XP_016869115.1
XM_017013627.1 XP_016869116.1
XM_017013628.1 XP_016869117.1
XM_017013629.1 XP_016869118.1
XM_017013630.1 XP_016869119.1
XM_017013631.1 XP_016869120.1
XM_017013632.1 XP_016869121.1
XM_017013633.1 XP_016869122.1
XM_017013634.1 XP_016869123.1
XM_017013635.1 XP_016869124.1
XM_017013636.1 XP_016869125.1
XM_017013637.1 XP_016869126.1
XM_017013638.1 XP_016869127.1
XM_017013639.1 XP_016869128.1
AB071403.1 BAB85992.1
AB081516.1 BAC16217.1
AK002126.1 BAA92093.1
AK314625.1
AL157483.1 CAB75673.1
AY358441.1 AAQ88806.1
BX649103.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
esv3616532 Chr.8:18974801 - 19484110 on Build GRCh38 Gain SH2D4A LOC100128993 CSGALNACT1 PSD3
nsv610752 Chr.8:19397305 - 19453985 on Build GRCh38 Loss CSGALNACT1
nsv610751 Chr.8:19368824 - 19427378 on Build GRCh38 Loss SH2D4A CSGALNACT1
nsv1022344 Chr.8:19412632 - 19466572 on Build GRCh38 Loss CSGALNACT1
esv34007 Chr.8:19395091 - 19624587 on Build GRCh38 Loss SH2D4A CSGALNACT1
nsv522185 Chr.8:19097292 - 20497802 on Build GRCh38 Gain LZTS1 LPL SH2D4A LZTS1-AS1 LOC100128993 INTS10 SLC18A1 ATP6V1B2 CSGALNACT1
nsv1016482 Chr.8:18977297 - 19481976 on Build GRCh38 Gain SH2D4A LOC100128993 CSGALNACT1 PSD3

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