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See other C9ORF3 CNV Assays ›
Gene Symbol
C9orf3
Assay Reference Genome
Location

Chr.9:94758489 on build GRCh38
Cytoband
9q22.32
Assay ID Hs05086507_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 84909

Gene Name:

 chromosome 9 open reading frame 3

Gene Aliases:

 AOPEP, AP-O, APO, C90RF3, ONPEP

Location:

 Chr.9:94726604-95148264 on Build GRCh38

Assay Gene Location:

 Within Intron 1
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
C9orf3 NM_001193331.2 NP_001180260.1
NM_032823.5 NP_116212.3
XM_005252284.2 XP_005252341.1
XM_006717306.1 XP_006717369.1
XM_011519119.1 XP_011517421.1
XM_011519120.2 XP_011517422.1
XM_011519121.2 XP_011517423.1
XM_011519122.2 XP_011517424.1
XM_011519123.2 XP_011517425.1
XM_011519127.1 XP_011517429.1
XM_011519129.1 XP_011517431.1
XM_011519130.1 XP_011517432.1
XM_011519134.2 XP_011517436.1
XM_017015230.1 XP_016870719.1
XM_017015231.1 XP_016870720.1
XM_017015232.1 XP_016870721.1
XM_017015234.1 XP_016870723.1
XM_017015235.1 XP_016870724.1
XM_017015236.1 XP_016870725.1
XM_017015237.1 XP_016870726.1
AK057450.1 BAB71491.1
AK296782.1
BC029616.1 AAH29616.1
DA222106.1
DA521148.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
esv3621113 Chr.9:94207958 - 94890837 on Build GRCh38 Gain LOC100132077 ZNF169 NUTM2F FBP2 MFSD14B C9orf3 FBP1 PCAT7 MIR2278 LOC728026
nsv1041922 Chr.9:94682694 - 94774471 on Build GRCh38 Gain C9orf3

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More Information


Additional Information:

For this assay, SNP(s) [rs78231644] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

Set Membership:

 Intragenic Intronic Non-exonic DGV Variation

Panther Classification:

Gene Ontology Categories:

Function(s) Process(es)


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