Genomic Map
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Target Gene Details
Entrez Gene ID: | 1464 |
Gene Name: | chondroitin sulfate proteoglycan 4 |
Gene Aliases: |
HMW-MAA, MCSP, MCSPG, MEL-CSPG, MSK16, NG2 |
Location: |
Chr.15:75674322-75712848 on Build GRCh38 |
Assay Gene Location: | Within Intron 5 |
| Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
|---|---|---|---|---|
| CSPG4 | NM_001897.4 | NP_001888.2 | ||
| AY359468.1 | AAQ62842.1 | |||
| X96753.1 | CAA65529.1 |
Target Copy Number Variation Details
DGV Version: |
Release date: 2016-05-15, GRCh GRCh38 |
| Target Variation |
Location | CNV Subtype |
Genes |
|---|---|---|---|
| esv2749895 | Chr.15:75415580 - 76472296 on Build GRCh38 | Deletion |
 LOC101929439
IMP3
DNM1P35
LOC441728
CSPG4
PTPN9
ODF3L1
SCAPER
FBXO22-AS1
FBXO22
TYRO3P
ISL2
SIN3A
UBE2Q2
SNUPN
ETFA
SNX33
MIR4313
NRG4
TMEM266
LOC107984799
|
| esv2749894 | Chr.15:75326873 - 75749895 on Build GRCh38 | Deletion |
COMMD4
IMP3
DNM1P35
MAN2C1
CSPG4
PTPN9
ODF3L1
SIN3A
NEIL1
SNUPN
SNX33
LOC107984799
MIR631
|
| nsv984092 | Chr.15:75677911 - 75708346 on Build GRCh38 | Duplication |
CSPG4
|
| nsv569997 | Chr.15:75672828 - 75699110 on Build GRCh38 | Loss |
CSPG4
|
| nsv527186 | Chr.15:75632102 - 75815389 on Build GRCh38 | Loss |
IMP3
DNM1P35
LOC441728
CSPG4
SNX33
ODF3L1
MIR4313
LOC107984799
|
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Additional Information:
For this assay, SNP(s) [rs75499392] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.
Set Membership: |
Intragenic
Intronic
Non-exonic
DGV Variation
|
Gene Ontology Categories:
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