Hs05342828_cn

• Gene Symbol: HMG20A
• Assay Reference Genome Location: Chr.15:77442142 on build GRCh38
• Cytoband: 15q24.3

Target Gene Details

• Entrez Gene ID: 10363
• Gene Name: high mobility group 20A
• Gene Aliases: HMGX1, HMGXB1
• Location: Chr.15:77420651-77519899 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
HMG20A	NM_001304504.1			NP_001291433.1
	NM_001304505.1			NP_001291434.1
	NM_018200.3			NP_060670.1
	XM_011521158.2			XP_011519460.1
	AF146222.1			AAF66706.1
	AK001601.1			BAA91782.1
	AK096546.1
	AK223100.1			BAD96820.1
	AK297449.1
	AK311376.1
	BC021959.1			AAH21959.1
	DA333471.1
	DB068283.1
	DB213761.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
esv2749898	Chr.15:75764003 - 77933523 on Build GRCh38	Deletion	ETFA FBXO22-AS1 LOC101929457 FBXO22 ISL2 PEAK1 TYRO3P MIR3713 TMEM266 LOC101929439 PSTPIP1 LOC645752 NRG4 LINC00597 RCN2 HMG20A LOC441728 LINGO1-AS2 UBE2Q2 SCAPER LINGO1 LINGO1-AS1 TSPAN3
nsv1040852	Chr.15:76867896 - 77845199 on Build GRCh38	Gain	RCN2 HMG20A LOC101929457 LINGO1-AS2 PEAK1 SCAPER LINGO1 LINGO1-AS1 PSTPIP1 TSPAN3 LINC00597

More Information

• Set Membership: Intragenic, Intronic, Non-exonic, DGV Variation

Gene Ontology Categories:

Process(es)

negative regulation of transcription from RNA polymerase II promoter
chromatin organization
transcription, DNA-templated
regulation of transcription, DNA-templated
chromatin modification
covalent chromatin modification
negative regulation of neuron differentiation

Function(s)

DNA binding
transcription factor activity, sequence-specific DNA binding
protein binding
protein heterodimerization activity