Hs05462940_cn

• Gene Symbol: LRRC36
• Assay Reference Genome Location: Chr.16:67340285 on build GRCh38
• Cytoband: 16q22.1

Target Gene Details

• Entrez Gene ID: 55282
• Gene Name: leucine rich repeat containing 36
• Gene Aliases: RORBP70, XLHSRF2
• Location: Chr.16:67326844-67385206 on Build GRCh38
• Assay Gene Location: Within Intron 2

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
LRRC36	NM_018296.5			NP_060766.5
	XM_005256025.2			XP_005256082.1
	XM_005256026.2			XP_005256083.1
	XM_005256027.2			XP_005256084.1
	XM_005256028.1			XP_005256085.1
	XM_011523200.1			XP_011521502.1
	XM_011523202.2			XP_011521504.1
	XM_011523203.1			XP_011521505.1
	XM_011523205.1			XP_011521507.1
	XM_011523206.2			XP_011521508.1
	XM_017023400.1			XP_016878889.1
	XM_017023401.1			XP_016878890.1
	XM_017023402.1			XP_016878891.1
	AY963267.1
	BC026156.2

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv522852	Chr.16:67153308 - 68071571 on Build GRCh38	Gain	EDC4 SLC12A4 AGRP FHOD1 CARMIL2 ZDHHC1 ELMO3 DPEP2 NUTF2 KIAA0895L TMEM208 HSF4 CENPT PLEKHG4 C16orf86 LOC107984813 TPPP3 PSKH1 PARD6A EXOC3L1 PSMB10 ENKD1 FAM65A THAP11 NRN1L CTRL TSNAXIP1 LCAT GFOD2 LOC100505942 DUS2 NOL3 LRRC36 FBXL8 LOC105369155 CTCF MIR328 DPEP3 RANBP10 E2F4 KCTD19 TRADD HSD11B2 LRRC29 ACD ATP6V0D1 LOC100131303 DDX28 SLC9A5
nsv833265	Chr.16:67327714 - 67373302 on Build GRCh38	Loss	LRRC36
nsv572906	Chr.16:67237955 - 67368685 on Build GRCh38	Loss	LRRC36 FHOD1 KCTD19 PLEKHG4 SLC9A5
nsv471092	Chr.16:67174030 - 67518392 on Build GRCh38	Gain	TPPP3 AGRP FHOD1 E2F4 LOC100505942 KCTD19 NOL3 ZDHHC1 HSD11B2 ELMO3 LRRC36 LOC105369155 KIAA0895L LRRC29 TMEM208 ATP6V0D1 MIR328 PLEKHG4 EXOC3L1 SLC9A5
nsv524363	Chr.16:67136529 - 68071571 on Build GRCh38	Loss	EDC4 SLC12A4 AGRP FHOD1 CARMIL2 ZDHHC1 ELMO3 DPEP2 NUTF2 KIAA0895L TMEM208 HSF4 CENPT PLEKHG4 C16orf86 LOC107984813 TPPP3 PSKH1 PARD6A B3GNT9 EXOC3L1 PSMB10 ENKD1 FAM65A THAP11 NRN1L CTRL TSNAXIP1 LCAT GFOD2 LOC100505942 DUS2 NOL3 LRRC36 FBXL8 LOC105369155 CTCF MIR328 DPEP3 RANBP10 E2F4 KCTD19 TRADD HSD11B2 LRRC29 C16orf70 ACD ATP6V0D1 LOC100131303 DDX28 SLC9A5

More Information

Additional Information:

For this assay, SNP(s) [rs78094270] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

• Set Membership: Intragenic, Intronic, Non-exonic, DGV Variation